Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00663 ATGGACGGCGGTGCTCCGTACAATCCACGTACTGTGGAAGAGGTGTTTAGGGATTTCAAGGGCCGTAGAGCTGGTTTAATCAAAGCTCTCACTACTGATGTTGAAGAGTTCTACCAGCAATGTGATCCTGAGAAAGAAAATCTTTGCCTTTATGGATTTCCGAGTGAGCAATGGGAAGTCAATTTACCCGCGGAAGAGGTGCCACCAGAGCTCCCAGAACCTGCACTTGGCATAAATTTTGCTAGAGACGGGATGCAAGAAAAGGACTGGCTATCCTTGGTTGCGGTTCATAGTGATGTTTGGCTGCTCTCTGTGGCATTTTATTTTGGAGCTAGGTTTGGGTTTGATAAGACAGATAGGAAGCGTCTATTTAATATGATAAACGATCTTCCAACAATATTTGAAGTGGTGACAGGGACAGCCAAAAAACAAGTTAAGGATAAATCATCAGTTTCAAATCATAGCAGTAATAAATCTAAATCAAATTCAAAGGATATCACTATTCTACGTGCCGTTCGGGTTACAAGTGCAACAAGGAGAGAGTTGTTAACAAACTACACCCTATCAACTATTGTTGCATTTAATAGTTATAGTGTAAAGATTCGAATTGAGGAAGCTGGAGAGATATTTTATTGCCTTCTAAAATGCTTCCACATCTTTTCCTCGACTGGAGAATCCTTTGCATCCACAAATGTCCTTAACAACATCTATTAA 714 40.62 MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNSKDITILRAVRVTSATRRELLTNYTLSTIVAFNSYSVKIRIEEAGEIFYCLLKCFHIFSSTGESFASTNVLNNIY* 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9234183 9240496 + Chy3G056430.1 Chy03g00663 222824

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00663 237 PANTHER CPG BINDING PROTEIN 4 166 IPR045104 GO:0006355|GO:0042393
Chy03g00663 237 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Chy03g00663 237 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 4 166 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00663 - - - csv:101208889 316.235
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00663 Chy-Chr3:9234183 Chy06g01612 Chy-Chr6:18609086 2.71E-76 dispersed
Chy03g00663 Chy-Chr3:9234183 Chy10g00423 Chy-Chr10:10085746 6.37E-74 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g139 Blo01g01452 Blo12g01023 . . . Bpe02g00502 . Bma01g02201 Cmo05g00430 Cmo12g00597 . Cma05g00416 . Car12g00605 Sed08g1791 Cpe07g00574 . Bhi04g01504 Tan02g1591 Cmetu03g1113 . Hepe08g1423 . Lcy13g2215 . . . . . . . . . . . . . . . Blo17g00276 . . Bda13g01589 Bpe14g00276 . . Bma02g00545 . . . . Cma12g00657 . Car05g00354 Cpe11g00358 . . . . . . . . Cla08g00996 Cam08g1443 Cec08g1020 Cco08g1144 . . Cre08g0932 Lsi08g00842 . Chy03g00663 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy06g01612 . 1 252 Alfin-like Transcription Factor Family AT1G14510 83.7 1.8e-113 405.6
Chy01g02184 . 10 248 Alfin-like Transcription Factor Family AT1G14510 67.9 6.1e-93 337.4
Chy10g00423 . 8 238 Alfin-like Transcription Factor Family AT1G14510 59.3 2.7e-77 285.4
Chy03g00663 . 9 161 Alfin-like Transcription Factor Family AT1G14510 82.4 2.3e-68 255.8
Chy04g02257 . 8 215 Alfin-like Transcription Factor Family AT1G14510 58.3 6.8e-68 254.2
Chy01g02184 . 1 250 Alfin-like Transcription Factor Family AT5G26210 64.5 8.3e-98 353.6
Chy06g01612 . 9 254 Alfin-like Transcription Factor Family AT5G26210 72.8 7.3e-94 340.5
Chy10g00423 . 7 240 Alfin-like Transcription Factor Family AT5G26210 59.5 2.9e-82 302.0
Chy03g00663 . 1 157 Alfin-like Transcription Factor Family AT5G26210 86.0 8.1e-77 283.9
Chy04g02257 . 8 215 Alfin-like Transcription Factor Family AT5G26210 55.4 5.8e-67 251.1
Chy01g02184 . 1 250 Alfin-like Transcription Factor Family AT3G42790 64.5 9.0e-97 350.1
Chy06g01612 . 9 256 Alfin-like Transcription Factor Family AT3G42790 71.8 1.6e-90 329.3
Chy10g00423 . 7 240 Alfin-like Transcription Factor Family AT3G42790 59.3 1.5e-80 296.2
Chy03g00663 . 1 150 Alfin-like Transcription Factor Family AT3G42790 81.5 3.0e-68 255.4
Chy04g02257 . 8 215 Alfin-like Transcription Factor Family AT3G42790 56.9 3.9e-68 255.0
Chy10g00423 . 1 240 Alfin-like Transcription Factor Family AT5G05610 76.8 6.2e-111 397.1
Chy04g02257 . 1 215 Alfin-like Transcription Factor Family AT5G05610 73.6 3.4e-93 338.2
Chy01g02184 . 10 250 Alfin-like Transcription Factor Family AT5G05610 63.6 7.9e-90 327.0
Chy06g01612 . 9 254 Alfin-like Transcription Factor Family AT5G05610 62.2 1.1e-83 306.6
Chy03g00663 . 8 164 Alfin-like Transcription Factor Family AT5G05610 68.2 2.3e-57 219.2
Chy10g00423 . 43 240 Alfin-like Transcription Factor Family AT3G11200 80.1 3.5e-95 344.7
Chy04g02257 . 43 215 Alfin-like Transcription Factor Family AT3G11200 75.7 1.5e-74 276.2
Chy01g02184 . 44 250 Alfin-like Transcription Factor Family AT3G11200 64.8 3.4e-74 275.0
Chy06g01612 . 44 254 Alfin-like Transcription Factor Family AT3G11200 63.0 2.5e-69 258.8
Chy03g00663 . 44 164 Alfin-like Transcription Factor Family AT3G11200 71.9 1.8e-43 172.9
Chy06g01612 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.1 1.4e-76 283.1
Chy03g00663 . 1 169 Alfin-like Transcription Factor Family AT2G02470 74.0 1.9e-65 246.1
Chy01g02184 . 10 160 Alfin-like Transcription Factor Family AT2G02470 77.5 3.0e-63 238.8
Chy04g02257 . 8 135 Alfin-like Transcription Factor Family AT2G02470 73.8 1.6e-53 206.5
Chy10g00423 . 8 155 Alfin-like Transcription Factor Family AT2G02470 66.9 3.6e-53 205.3
Chy03g00663 . 1 188 Alfin-like Transcription Factor Family AT5G20510 71.4 4.3e-75 277.7
Chy01g02184 . 1 162 Alfin-like Transcription Factor Family AT5G20510 74.5 5.1e-68 254.2
Chy06g01612 . 3 172 Alfin-like Transcription Factor Family AT5G20510 71.5 7.4e-67 250.4
Chy10g00423 . 7 157 Alfin-like Transcription Factor Family AT5G20510 63.1 6.1e-53 204.1
Chy04g02257 . 7 157 Alfin-like Transcription Factor Family AT5G20510 61.8 3.3e-51 198.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000240 6 20 6 5 4 4 8 4 4 3 3 4 4 3 3 7 4 8 7 3 3 4 4 4 5 2 5 11 7 4 159
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g00663 Chy_Chr03 FPKM 17.701149 21.602121 28.452745 24.109024 11.99831 11.002224 13.924863 36.343555 39.516617 52.428009