Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00665 ATGGCAGAAAGTAGAAGAGAGAAGCTTAATGAAGCCGCCGTTGAAGGAAACGTAACAACCTTGTTAGAGTTGCTCCAACAAGATCAACTATTGTTAACCAGACTCAATTACCTCAACGACTTTAACGAGACTCCACTGCACGTGGCTTCTCTTCTTGGTCACCTCACATTTGTTCATGAGCTTCTCAAGCGAAGCCCTCGGCTGGCCAAGGAGTTGGATTCTCGCGGTTGTTCCGCCCTCCATTTCGCCGCTGCTGGGGGCTTTTTAGACATTGTCAAGATTCTGGTGCGAGTTGATCCTGATATGTGTTCTATATGCAATCAAGATGGCATGAACCCTATTCATCTTGCCGCCATGAGAGGCCGGGTTGATGTCTTGGCTAAGCTCGTCCGAGTCAGACCCGCAGCCGCTCGAACTCCCGTGGACGGCGGTGGAACGGTGTTGCATTTGTGTGTTAAGTATAATCAGCTTGAAGCTCTGAAGATGTTGATTGAAACTATTGGAGTGAAAGACAGAGACAATGGGTTTATTAATAGTCAAGATGATTATGGGTTCAGTATCCTTCATTTAGCAGTCTCCAACAAACAACTTCAGACGGTGAAATATCTAATCAACAACAATTCAAAAATCCAAGTAAATGCAAAAACCTCAAATGGGTTAACAGCTCTTGACATTCTATCTCAAAGCCATAGAGATTTAAAGGACATGGACATTGCAGAGACTCTCACCGCCGCCAAAGCCGTCCGAACAACAAACAAAAAACCGCCGCCGCCGCCGTCGTCTTCTAATTGTGTCGAGAAAAAAAAAAGGACAGGGCTTAGATGGGCCTTTTCAGCTTTATTCCACGGTGGCGATTGGTGGTTTCCGAACGAAACAAGCGAGTGGCTAATGAAGCAAGAATCACTAATGGTTGTAGCATCCCTAATTGCAACAATGGCTTTTCAAGCCGGTATGAGCCCTCCCGGTGGCGTTTTGGGTGATGATTCACCGGGAGCCGGAACGTCGGTAATGGCGGCAAAAGACGAAGAAACATACCAGAAGTATCTTGTGGCTAACTCAATTGGGTTCATGACTTCGTTCATTGCAATTGTGATGATTCTTATTGGGTTGCCTAAGAAACGTATTTTCATGAGGTTTTTGATTATGACAATGTGTGCTGCTGTGTGTTCCATGGCTTTCACTTATGGATATTCCATACGGTTTTTCACTCCATTATCACCCGGTATTTCTCCTGCACCCTCTCCAGAACCTGTTCAAGCTGGTTCCGTTACCAATGCAGGTTATAAGCCGAAGTCCGTCATCTCTTTGATTTCGGTGATTGTTGCTATAGTGGTGACTTCTTCCATGGTGGTTTTCTTGATCGGGAAGCTCGTTTACGTTCATTCTCGTGAAAATAAATCTACCGAACACCCTGATCCGCCGCTATGA 1428 45.52 MAESRREKLNEAAVEGNVTTLLELLQQDQLLLTRLNYLNDFNETPLHVASLLGHLTFVHELLKRSPRLAKELDSRGCSALHFAAAGGFLDIVKILVRVDPDMCSICNQDGMNPIHLAAMRGRVDVLAKLVRVRPAAARTPVDGGGTVLHLCVKYNQLEALKMLIETIGVKDRDNGFINSQDDYGFSILHLAVSNKQLQTVKYLINNNSKIQVNAKTSNGLTALDILSQSHRDLKDMDIAETLTAAKAVRTTNKKPPPPPSSSNCVEKKKRTGLRWAFSALFHGGDWWFPNETSEWLMKQESLMVVASLIATMAFQAGMSPPGGVLGDDSPGAGTSVMAAKDEETYQKYLVANSIGFMTSFIAIVMILIGLPKKRIFMRFLIMTMCAAVCSMAFTYGYSIRFFTPLSPGISPAPSPEPVQAGSVTNAGYKPKSVISLISVIVAIVVTSSMVVFLIGKLVYVHSRENKSTEHPDPPL* 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9248192 9249713 - Chy3G056450.1 Chy03g00665 222826

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00665 475 ProSiteProfiles Ankyrin repeat profile. 183 215 IPR002110 GO:0005515
Chy03g00665 475 ProSiteProfiles Ankyrin repeat profile. 75 102 IPR002110 GO:0005515
Chy03g00665 475 ProSiteProfiles Ankyrin repeat profile. 109 131 IPR002110 GO:0005515
Chy03g00665 475 ProSiteProfiles Ankyrin repeat region circular profile. 75 102 - -
Chy03g00665 475 SMART ANK_2a 41 70 IPR002110 GO:0005515
Chy03g00665 475 SMART ANK_2a 183 212 IPR002110 GO:0005515
Chy03g00665 475 SMART ANK_2a 109 138 IPR002110 GO:0005515
Chy03g00665 475 SMART ANK_2a 218 253 IPR002110 GO:0005515
Chy03g00665 475 SMART ANK_2a 75 104 IPR002110 GO:0005515
Chy03g00665 475 SMART ANK_2a 143 172 IPR002110 GO:0005515
Chy03g00665 475 Pfam Ankyrin repeats (many copies) 177 225 IPR002110 GO:0005515
Chy03g00665 475 PANTHER - 7 404 - -
Chy03g00665 475 ProSiteProfiles Ankyrin repeat region circular profile. 183 212 - -
Chy03g00665 475 SUPERFAMILY Ankyrin repeat 9 229 IPR036770 -
Chy03g00665 475 Gene3D - 2 307 IPR036770 -
Chy03g00665 475 MobiDBLite consensus disorder prediction 247 266 - -
Chy03g00665 475 Pfam Domain of unknown function 298 399 IPR026961 -
Chy03g00665 475 Pfam Ankyrin repeats (3 copies) 80 166 IPR002110 GO:0005515
Chy03g00665 475 PANTHER CASKIN 7 404 - -
Chy03g00665 475 ProSiteProfiles Ankyrin repeat region circular profile. 109 131 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00665 - - - csv:101204064 845.884
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00665 Chy-Chr3:9248192 Chy03g00669 Chy-Chr3:9277725 2.75E-58 dispersed
Chy03g00667 Chy-Chr3:9268636 Chy03g00665 Chy-Chr3:9248192 1.11E-09 dispersed
Chy03g00664 Chy-Chr3:9240597 Chy03g00665 Chy-Chr3:9248192 7.72E-11 tandem
Chy03g00665 Chy-Chr3:9248192 Chy03g00666 Chy-Chr3:9266369 4.43E-11 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g137 . . . . . . . . . . . . . . Sed08g1788 . . Bhi04g01497 Tan02g1599 Cmetu03g0638 . Hepe08g1418 . Lcy13g2206 . . . . . . . . . . . . . . . . Blo18g00266 . . . . . Bma02g00544 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00846 . Chy03g00665 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002621 0 1 10 2 1 1 1 1 1 1 1 1 1 3 1 2 1 0 1 1 1 1 3 6 4 4 2 1 3 2 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g00665 Chy_Chr03 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0