Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00669 ATGGCAACCTTAGAAAACAAGCTTCAAGAAGCAGCAATGTCGGGCAACGTAGAAAAGATGTTAGAATTGCTCAAACAATCCCTTTGTCTTTTCGATACAGTCGTACCCGATAATCCACCGCCTCACGATTTCGCCAATTTCCCTGACCGGATTCTTCAACAGAAGCCTCACCTGACTCGAGTGTTGGACTCAAAGGGATCATGCCTCCTTCACTTAGCAGCTGCAGAGGGCCATGTCGAAATTGTGAGGCTTTTGCTGCAAGTCGACTCTCATTCGTGCTTGTTTCGCAATGCAGATGGTTGGAACCCTCTTCAACTTGCTGCCGTAAATGGCCATGTTGATGTCTTGAAAGAGCTCGTTCGTGAAAGGCCTGATGCTGCTCGAGCTCGAACCGTTGTCAACGGTGGGGGAAACGCCTTGCATTTGTGTGTGAAGAACAACCAGTTGGAAGCTTTGAAGGTGTTGGTTGTTGATGCTGTAGGTTTTATTAACGAAAAAGATGATTTCGGATGCTCTATACTTCAATTAGCTGTCTCTGACAAACAGACTGAGACGATAAAATTTTTGGTGAACACAAATGGAATGGAACTAAATGACCTGTTCCAGAGCAACAAAGAAGAAAACGCCTCGACCACAGCGGAGATACCGGGCGCCATAGTGCCATCGCCCACCAGCCATTTTGACAGGAAAAATAGCTTCAGCAAGCAGCAGAAGATGAGACAGAGAGAGGCACTAATGGTGGTGGCGTCGGTAGTGGCGACGATGGCATTTCAGGCTGCCATCAACCCTCCTAATGGCTTATGGAAGGATGCAGAAAAATCGACGATACACCCTCATCGATTCGTCGCCTTCGTTTCTTCCATCACTTTCAGTTTTGTGTTCTCCATTATTGAATTATTTTTGCTCGTTAGTGATTATCCCTCCACCATTCCTCTTTTCTTGAGTTTTCTTTGGCTTGCACAGATCTTGTCCATTGGAGGCATGGCTGTGGCATATTTGATTGCAATTATGTGTTTGTCTTAA 1023 45.85 MATLENKLQEAAMSGNVEKMLELLKQSLCLFDTVVPDNPPPHDFANFPDRILQQKPHLTRVLDSKGSCLLHLAAAEGHVEIVRLLLQVDSHSCLFRNADGWNPLQLAAVNGHVDVLKELVRERPDAARARTVVNGGGNALHLCVKNNQLEALKVLVVDAVGFINEKDDFGCSILQLAVSDKQTETIKFLVNTNGMELNDLFQSNKEENASTTAEIPGAIVPSPTSHFDRKNSFSKQQKMRQREALMVVASVVATMAFQAAINPPNGLWKDAEKSTIHPHRFVAFVSSITFSFVFSIIELFLLVSDYPSTIPLFLSFLWLAQILSIGGMAVAYLIAIMCLS* 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9277725 9279475 + Chy3G056490.1 Chy03g00669 222830

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00669 340 ProSiteProfiles Ankyrin repeat profile. 65 87 IPR002110 GO:0005515
Chy03g00669 340 ProSiteProfiles Ankyrin repeat profile. 99 131 IPR002110 GO:0005515
Chy03g00669 340 Pfam Domain of unknown function 239 338 IPR026961 -
Chy03g00669 340 ProSiteProfiles Ankyrin repeat region circular profile. 65 87 - -
Chy03g00669 340 SUPERFAMILY Ankyrin repeat 8 199 IPR036770 -
Chy03g00669 340 PANTHER HOMEOBOX PROTEIN WARIAI 46 302 - -
Chy03g00669 340 SMART ANK_2a 65 95 IPR002110 GO:0005515
Chy03g00669 340 SMART ANK_2a 169 199 IPR002110 GO:0005515
Chy03g00669 340 SMART ANK_2a 99 128 IPR002110 GO:0005515
Chy03g00669 340 SMART ANK_2a 135 165 IPR002110 GO:0005515
Chy03g00669 340 Pfam Ankyrin repeats (3 copies) 9 122 IPR002110 GO:0005515
Chy03g00669 340 Pfam Ankyrin repeats (3 copies) 136 198 IPR002110 GO:0005515
Chy03g00669 340 Gene3D - 2 215 IPR036770 -
Chy03g00669 340 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1-LIKE 46 302 - -
Chy03g00669 340 ProSiteProfiles Ankyrin repeat region circular profile. 99 125 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00669 - - - csv:101203818 629.787
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00665 Chy-Chr3:9248192 Chy03g00669 Chy-Chr3:9277725 2.75E-58 dispersed
Chy03g00669 Chy-Chr3:9277725 Chy04g00676 Chy-Chr4:8020317 3.88E-33 dispersed
Chy03g00666 Chy-Chr3:9266369 Chy03g00669 Chy-Chr3:9277725 7.05E-06 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g136 . . . . . . . . Cmo05g00431 . . Cma05g00417 . . Sed11g0850 . . Bhi04g01495 Tan02g1603 Cmetu03g0055 . . . Lcy13g2203 . . . . . . . . . . . . . . . Blo17g00277 Blo18g00268 . . Bpe14g00571 . . Bma02g00541 . . . . . . Car05g00897 Cpe11g00359 . . . . . . . . Cla08g00998 Cam08g1445 Cec08g1023 Cco08g1146 Clacu08g1147 . Cre08g0934 Lsi08g00848 . Chy03g00669 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014689 0 1 0 0 0 2 0 1 1 1 1 1 0 1 1 0 1 0 0 1 1 0 0 1 1 1 1 1 1 0 19
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g00669 Chy_Chr03 FPKM 0.79655 1.28995 0.517265 0.900678 0.955539 1.144577 1.232891 0.0 0.0 0.0