Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00679 ATGTCCAAAGAGCCCCCACAACAATTAAAGAAGACCTACTTACTGCAGGGCTATTTTCGTCATATAAATTTTCCATCCTCCTCTTCCCACCATTACAAATTCCCAAAATTTCATCGTTCAATCACAATAATCTGCTCAGATCGAAAGCCATTTCTCAGCCATCGGTTCATTCAGATTCCAGATATGGAGGAAGAGGAGTCCGGCGAGGCTATCCGGCCGGAATTTCCGACGGGACGAGTGAAGAAGATAATGAAGCTCGACAAGGACATTGGCAAAGTGAATTCAGAAGCCTTGTTTCTAGTTTCATGCGCCACCGAACTCTTCCTTAAGCTTCTAGCTGAAAAATCTGCAGAATCCGCCGCTGAGAAGAAACGGAAGACCGTGAAGCTTGAACACATTCGAATGGCCGTCAAAAGGCATCGCTCGATCAGTGATTTTCTTCTCGATTCGCTTCCTCTTCCGTCTCAGCCGTCGGATGCGCCGGCGAAGGACGAGAATCGCACTCGCGCTGTTGTTGATAAAGTGGCTCCTGAAGGAACGCGTCGAATCGATGATTTCTTTCGTCGGTCAACTAAGACAAAGTCGGCGGAGACCGAGTCATAG 603 47.76 MSKEPPQQLKKTYLLQGYFRHINFPSSSSHHYKFPKFHRSITIICSDRKPFLSHRFIQIPDMEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAPAKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAETES* 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9359449 9360051 + Chy3G056590.1 Chy03g00679 222840

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00679 200 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 74 137 IPR003958 -
Chy03g00679 200 PANTHER NUCLEAR FACTOR Y, SUBUNIT C13 54 191 - -
Chy03g00679 200 SUPERFAMILY Histone-fold 73 152 IPR009072 GO:0046982
Chy03g00679 200 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 54 191 - -
Chy03g00679 200 Gene3D Histone, subunit A 45 152 IPR009072 GO:0046982
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00679 - - - csv:101207423 231.106
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00679 Chy-Chr3:9359449 Chy10g00706 Chy-Chr10:13408346 3.90E-10 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy02g02666 . 1 183 CCAAT-HAP5 Transcription Factor Family AT3G48590 88.9 4.6e-87 317.8
Chy08g01003 . 82 249 CCAAT-HAP5 Transcription Factor Family AT3G48590 64.9 2.6e-53 205.7
Chy01g00305 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.8 7.5e-53 204.1
Chy08g01003 . 1 259 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.8 6.4e-57 217.6
Chy01g00305 . 22 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 68.8 6.5e-49 191.0
Chy02g02666 . 2 97 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.3 1.7e-41 166.4
Chy08g01003 . 23 249 CCAAT-HAP5 Transcription Factor Family AT1G54830 60.5 3.1e-61 231.9
Chy01g00305 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 2.0e-52 202.6
Chy02g02666 . 2 157 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.1 4.2e-50 194.9
Chy02g02666 . 8 156 CCAAT-HAP5 Transcription Factor Family AT5G50480 56.3 1.7e-37 152.9
Chy02g02666 . 1 183 CCAAT-HAP5 Transcription Factor Family AT5G63470 80.7 3.8e-79 291.6
Chy08g01003 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 61.8 6.3e-50 194.5
Chy01g00305 . 82 233 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.9 1.8e-49 193.0
Chy01g00305 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.1 2.1e-64 242.3
Chy08g01003 . 54 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 69.1 6.6e-50 194.1
Chy02g02666 . 1 122 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.4 4.3e-49 191.4
Chy03g00679 . 62 196 CCAAT-HAP5 Transcription Factor Family AT5G43250 63.3 1.4e-37 152.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009175 3 1 1 1 0 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 0 1 1 1 1 0 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17680 PF00808 CBFD_NFYB_HMF 9.60E-20 CL0012 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g00679 Chy_Chr03 FPKM 11.433187 11.599584 0.185833 0.204864 1.782424 1.987976 1.837323 0.306587 0.401223 0.42821