Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00701 ATGGCCGATTCTCCTCCTCCTCCTCCTCTTTTCTCCACTGCCGATTCCTCCTCTACTTCCCCCTCCGACGCTCTTTTCTTCTTCCCTCCCGATTCCGATTCCACCATCCTCACCGAATTCGGTTGGAATTTCCACTCTCTTCAACCTCAACCTTCTCGATTCACTCACTCTCACCGGATCCACTCCGATTTCCCTCCAACCTCCACTACCACCACTACTACTACTACTACTACTACTACTACTACTACTACCACTACCACTACCACTACTCCACTCATCGAAGACTCCGCTGGATTATCAGACGCTCCTCTTCCTCTCCCTTCTAATCCTTCTCTCTCTTCCAGTTCCAGCGGTGAGCCCCCGGACAAACCGCCTGAGATCATTACTCCGCGGAAGGTGAAAAAGAAGGGGCAAAAGCGAATTCGGCAGCCAAGATTTGCGTTCATGACCAAAAGTGAAGTTGATCATCTTGAAGATGGTTACCGGTGGAGGAAATATGGACAAAAGGCTGTCAAAAACAGTCCTTTCCCTAGGAGTTACTACAGGTGCACAAACAGCAAATGCACAGTAAAAAAAAGGGTAGAACGGTCGTGTGAAGATTCAAGCGTTGTAATAACAACATATGAAGGCCAACATTGCCATCACACCGTTGGATTCCCTCGAGGTGGATTAACCATAGCTCATGAAACTTCTTTTGGGTCTCAATTTTCACCTCAATTCCCACATTTTTTTTACCCTGATCCACCACCACCAACAACAACTAATCATAACCCTCCCACACCTCCCATTGACCAACCACTACACCATTTCCCCAGCACTCCTAGTTCGACTGAACAACAAGAACCACCAAACTCAAATCTCCAACAACTTCCTTCCAACGAAGGCTTGCTCGGTGCTATCGTCCCCCCTGCCATGATGCGTAGAACAACATGA 933 47.91 MADSPPPPPLFSTADSSSTSPSDALFFFPPDSDSTILTEFGWNFHSLQPQPSRFTHSHRIHSDFPPTSTTTTTTTTTTTTTTTTTTTTTTPLIEDSAGLSDAPLPLPSNPSLSSSSSGEPPDKPPEIITPRKVKKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSCEDSSVVITTYEGQHCHHTVGFPRGGLTIAHETSFGSQFSPQFPHFFYPDPPPPTTTNHNPPTPPIDQPLHHFPSTPSSTEQQEPPNSNLQQLPSNEGLLGAIVPPAMMRRTT* 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9543590 9547659 - Chy3G056810.1 Chy03g00701 222862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00701 310 MobiDBLite consensus disorder prediction 52 95 - -
Chy03g00701 310 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 53 256 - -
Chy03g00701 310 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 53 256 IPR044810 GO:0003700
Chy03g00701 310 MobiDBLite consensus disorder prediction 242 268 - -
Chy03g00701 310 MobiDBLite consensus disorder prediction 1 24 - -
Chy03g00701 310 MobiDBLite consensus disorder prediction 241 310 - -
Chy03g00701 310 Pfam WRKY DNA -binding domain 158 214 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy03g00701 310 SMART WRKY_cls 157 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy03g00701 310 MobiDBLite consensus disorder prediction 52 143 - -
Chy03g00701 310 SUPERFAMILY WRKY DNA-binding domain 149 215 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy03g00701 310 MobiDBLite consensus disorder prediction 269 293 - -
Chy03g00701 310 MobiDBLite consensus disorder prediction 106 120 - -
Chy03g00701 310 Gene3D WRKY domain 144 210 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy03g00701 310 ProSiteProfiles WRKY domain profile. 152 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00170 Chy-Chr2:1195290 Chy03g00701 Chy-Chr3:9543590 4.39E-45 dispersed
Chy03g00701 Chy-Chr3:9543590 Chy11g01581 Chy-Chr11:22383847 1.08E-40 dispersed
Chy03g00701 Chy-Chr3:9543590 Chy06g00766 Chy-Chr6:5293301 2.00E-45 transposed
Chy03g00701 Chy-Chr3:9543590 Chy01g00888 Chy-Chr1:8099252 7.69E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17681 PF03106 WRKY 5.70E-24 CL0274 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00701 - - cmo:103488478 452.21