Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00719 ATGCCGAGCATTTCGGCCCTCTATTCCATTCAAGAAGTCTCACAGCACAGTTCCAACGACGACTGTTGGATCATTATCGATGGCAAGGTATACGATTTGACTTCATATTTGGATGAGCATCCTGGTGGAGATGATGCTATTGTGGCTGCAACTGGCAGAGATGCCACGGATGATTTTGAAGATGCTGGTCATAGCAAAGATGCCAGGGAGTTGATGGAGAAGTTCTATATCGGCTTGCTTGACACATCTTCCTTGGATAGCCTAAAACTTGAAACGAATCAAGTAGACGGTTATGCAACTCGGGTTCAGACCTTGACAAAGCAATACTGGAAGGCCCCTGTTGCAGTAATTGGTATTTCTGTGGTACTTGGTTGGGCATACTTGCGCAAAAAGTGA 396 45.45 MPSISALYSIQEVSQHSSNDDCWIIIDGKVYDLTSYLDEHPGGDDAIVAATGRDATDDFEDAGHSKDARELMEKFYIGLLDTSSLDSLKLETNQVDGYATRVQTLTKQYWKAPVAVIGISVVLGWAYLRKK* 132
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9661591 9663648 + Chy3G056990.1 Chy03g00719 222880

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00719 131 Gene3D - 3 86 IPR036400 -
Chy03g00719 131 PANTHER CYTOCHROME B5 ISOFORM A 3 130 - -
Chy03g00719 131 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Chy03g00719 131 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Chy03g00719 131 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Chy03g00719 131 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Chy03g00719 131 PANTHER CYTOCHROME B5 3 130 - -
Chy03g00719 131 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 5 85 IPR036400 -
Chy03g00719 131 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Chy03g00719 131 SMART Cyt_b5_2 8 81 IPR001199 -
Chy03g00719 131 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037
Chy03g00719 131 Pfam Cytochrome b5-like Heme/Steroid binding domain 11 80 IPR001199 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00719 K23490 CYB5; cytochrome b5 - csv:101220127 261.536
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00719 Chy-Chr3:9661591 Chy05g00551 Chy-Chr5:5995328 2.56E-34 dispersed
Chy03g00719 Chy-Chr3:9661591 Chy06g00372 Chy-Chr6:2493956 6.77E-35 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy06g00372 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.4e-51 199.1
Chy05g00551 . 1 135 NADPH P450 reductases AT5G53560 65.9 9.9e-50 193.0
Chy04g00851 . 4 134 NADPH P450 reductases AT5G53560 63.4 1.5e-45 179.1
Chy09g01458 . 527 638 NADPH P450 reductases AT5G53560 74.1 8.1e-44 173.3
Chy06g00372 . 1 132 NADPH P450 reductases AT5G48810 64.9 7.4e-48 186.8
Chy05g00551 . 1 134 NADPH P450 reductases AT5G48810 62.5 1.3e-47 186.0
Chy04g00851 . 2 132 NADPH P450 reductases AT5G48810 60.9 1.7e-44 175.6
Chy06g00372 . 22 135 NADPH P450 reductases AT2G32720 84.2 5.2e-51 197.2
Chy05g00551 . 13 135 NADPH P450 reductases AT2G32720 73.4 4.2e-48 187.6
Chy04g00851 . 21 132 NADPH P450 reductases AT2G32720 69.6 1.1e-40 162.9
Chy09g01458 . 533 636 NADPH P450 reductases AT2G32720 68.3 3.0e-38 154.8
Chy03g00719 . 1 130 NADPH P450 reductases AT1G26340 54.5 6.7e-38 153.7
Chy08g00202 CCT 2 282 NADPH P450 reductases AT5G17770 81.5 2.2e-131 465.3
Chy04g01700 CCT 2 281 NADPH P450 reductases AT5G17770 76.4 4.4e-124 441.0
Chy05g00027 . 6 279 NADPH P450 reductases AT5G17770 75.2 3.9e-117 417.9
Chy06g00372 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.4e-51 199.1
Chy05g00551 . 1 135 NADPH P450 reductases AT5G53560 65.9 9.9e-50 193.0
Chy04g00851 . 4 134 NADPH P450 reductases AT5G53560 63.4 1.5e-45 179.1
Chy09g01458 . 527 638 NADPH P450 reductases AT5G53560 74.1 8.1e-44 173.3
Chy06g00372 . 1 132 NADPH P450 reductases AT5G48810 64.9 7.4e-48 186.8
Chy05g00551 . 1 134 NADPH P450 reductases AT5G48810 62.5 1.3e-47 186.0
Chy04g00851 . 2 132 NADPH P450 reductases AT5G48810 60.9 1.7e-44 175.6
Chy06g00372 . 22 135 NADPH P450 reductases AT2G32720 84.2 5.2e-51 197.2
Chy05g00551 . 13 135 NADPH P450 reductases AT2G32720 73.4 4.2e-48 187.6
Chy04g00851 . 21 132 NADPH P450 reductases AT2G32720 69.6 1.1e-40 162.9
Chy09g01458 . 533 636 NADPH P450 reductases AT2G32720 68.3 3.0e-38 154.8
Chy03g00719 . 1 130 NADPH P450 reductases AT1G26340 54.5 6.7e-38 153.7
Chy08g00202 CCT 2 282 NADPH P450 reductases AT5G17770 81.5 2.2e-131 465.3
Chy04g01700 CCT 2 281 NADPH P450 reductases AT5G17770 76.4 4.4e-124 441.0
Chy05g00027 . 6 279 NADPH P450 reductases AT5G17770 75.2 3.9e-117 417.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013997 0 1 0 0 1 1 1 1 1 1 0 1 1 1 1 1 1 2 0 1 1 0 1 0 1 0 1 1 2 1 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g00719 Chy_Chr03 FPKM 2.085781 5.942495 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0