Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00734 ATGAGAACGGGGAAAAGCAATCAGGAAGACGACGAGTACGATGAGGATGAGCTGGTTGGTAAAAGAGAGGGGCCTTCTTCTACTTCCAACGCTATTAGTAGCATCGGCAACAGCAAAGATGGGAAGAACAACGATAAGGCTAATGCCATACGGTCGAAGCACTCTGTGACAGAGCAGCGCAGAAGAAGCAAGATAAATGAGAGATTCCAGATTTTGAGAGATCTTATACCTCATAGTGATCAAAAGAGAGACACTGCCTCGTTTTTATTGGAGGTGATTGAGTATGTTCAGTATTTACAGGAGAAGGTGCAGAAGTACGAGGGTTCATATCAGAATTGGAGTGGGGAACCTACTAAGCTAATACCATGGAGGAACAGTCATTGGCGCATGCAAACTTTCGTTGGGCATCAACAATCTGTAAAAAATGGTTCTGCTTCAGGACCAACTTATTCTGGGAAGTTTGATGACAACAACATTTCTATTTCACCAGCAATGCTTGCAAGCTCACAAAATCCTCTCGACTCCCACTCTGGCAGAGATATTCTACAGGAAGCTGACATAACAAATAAAGTTCCACATCCTATGTCTCTGGAAGGAAATATGCATGCTTCTATTCGTAGCGACACTGTTCTTGATCACTCTCTCCACATTCCAATTTCTGATCCACAGGCAACAGAGTGTCCCATCACCAACCATGCAACAAACCAACCAGAAGAGATGGGTATTGAAGGGGGGACAATAAGCGTTTCAAGTGTTTATTCAGAAGGGTTTATGAACAGCTTGGCTCAAGCTTTGCAGAGTACTGGACTGGATTTGTCACAAGCTAGCATCTCCGTTCAGATTGATCTGGGCAAGAGAGCCAATAAGGGGATGCCATTTGGAACGCCTATTTTTAAGGAATCTGGAAATCCTTCCTCCAACCACCCAGCAATGGCAAATGTAGGGGACCTGGGCAGCGGAGATGACTCAGAACAAGCAAAAAAGCGGCTAAGGACATGA 999 44.64 MRTGKSNQEDDEYDEDELVGKREGPSSTSNAISSIGNSKDGKNNDKANAIRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQNWSGEPTKLIPWRNSHWRMQTFVGHQQSVKNGSASGPTYSGKFDDNNISISPAMLASSQNPLDSHSGRDILQEADITNKVPHPMSLEGNMHASIRSDTVLDHSLHIPISDPQATECPITNHATNQPEEMGIEGGTISVSSVYSEGFMNSLAQALQSTGLDLSQASISVQIDLGKRANKGMPFGTPIFKESGNPSSNHPAMANVGDLGSGDDSEQAKKRLRT* 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9784440 9788869 - Chy3G057140.1 Chy03g00734 222895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00734 332 Pfam Helix-loop-helix DNA-binding domain 51 100 IPR011598 GO:0046983
Chy03g00734 332 Gene3D - 47 119 IPR036638 GO:0046983
Chy03g00734 332 CDD bHLH_AtBIM_like 48 124 - -
Chy03g00734 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 119 IPR036638 GO:0046983
Chy03g00734 332 MobiDBLite consensus disorder prediction 1 62 - -
Chy03g00734 332 MobiDBLite consensus disorder prediction 296 332 - -
Chy03g00734 332 SMART finulus 55 105 IPR011598 GO:0046983
Chy03g00734 332 MobiDBLite consensus disorder prediction 23 43 - -
Chy03g00734 332 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 332 IPR044295 GO:0003700|GO:0006351|GO:0046983
Chy03g00734 332 PANTHER TRANSCRIPTION FACTOR BIM2 1 332 - -
Chy03g00734 332 MobiDBLite consensus disorder prediction 44 62 - -
Chy03g00734 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 49 99 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02415 Chy-Chr2:27870793 Chy03g00734 Chy-Chr3:9784440 2.31E-71 dispersed
Chy03g00734 Chy-Chr3:9784440 Chy02g00903 Chy-Chr2:5869466 1.30E-09 dispersed
Chy12g01472 Chy-Chr12:18661897 Chy03g00734 Chy-Chr3:9784440 1.70E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17682 PF00010 HLH 1.80E-13 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00734 - - csv:101217750 660.603