Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00745 ATGCATGCGGATCAGCTTTGGGAGTTTGAGTCCGATGAAGGGATCCGACCCGGTATTGACAGAGAACTTCCCGGTTCCCTTGGGAAAAGGTTATGCGGTGTTCGTACTGAATGGTTGGAGACGACGATGAAGCTCACATGGAAGAACAAGGGCAATAGTAAGAAGCGATCTCTTACAACTATTTCAACCCGTTCAAATCTTCCTTTTGAGGTACCTGGCGTGGTGGAGGAAGACGATAGGGCTAATCCCCAAGATAAAGAAGTAACCGCCCAGGCGGTAGACCGTAGTGAGGATGAAGCTTCAGACCGTTCCCTTTCCGACCTCAAACGTCTCGCTGAATCATTTCAAGCTCAAGGCGATACGCTTGCGGAGGGTGGGAAATTCCGGGAAGCTCTGGGAAAATGGGAGACTGCTCTTACTTTGATGCCCGAAAATGCAGTTTTACATGAACAAAAGGCACAAGTTCTACTCGAGGTTGGGGAAGCTTGGGGTGCTTTGAAGGCTGCAACCAGAGCTACTGACTTAGATCCATCATGGGCTGAGGGGTGGATCACTCTTGGTAGAGCACAGTTAAACTTTGGGGAACCAGATAGTGCTATAGAAAGCTTTGACAGAGCACTGGCCATTAAGCCTGATTCTGGGGATGCCCAAGATGACCGACAAACTGCAATGCGTCTTATAAAGCGGCGGAAACAGCTCCATTCAACTGGGTTGAGCAGTTCTAATAATCGTTATTTGGTGGGAGAGAAGTTGAGTGATGCTGATGGTTCATGA 774 48.71 MHADQLWEFESDEGIRPGIDRELPGSLGKRLCGVRTEWLETTMKLTWKNKGNSKKRSLTTISTRSNLPFEVPGVVEEDDRANPQDKEVTAQAVDRSEDEASDRSLSDLKRLAESFQAQGDTLAEGGKFREALGKWETALTLMPENAVLHEQKAQVLLEVGEAWGALKAATRATDLDPSWAEGWITLGRAQLNFGEPDSAIESFDRALAIKPDSGDAQDDRQTAMRLIKRRKQLHSTGLSSSNNRYLVGEKLSDADGS* 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9930530 9936305 + Chy3G057250.1 Chy03g00745 222906

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00745 257 ProSiteProfiles TPR repeat profile. 180 213 IPR019734 GO:0005515
Chy03g00745 257 SMART tpr_5 146 179 IPR019734 GO:0005515
Chy03g00745 257 SMART tpr_5 180 213 IPR019734 GO:0005515
Chy03g00745 257 SMART tpr_5 112 145 IPR019734 GO:0005515
Chy03g00745 257 Pfam Tetratricopeptide repeat 152 213 - -
Chy03g00745 257 PANTHER OSMOSIS RESPONSIVE FACTOR 43 252 - -
Chy03g00745 257 MobiDBLite consensus disorder prediction 77 103 - -
Chy03g00745 257 Gene3D Tetratricopeptide repeat domain 104 244 IPR011990 GO:0005515
Chy03g00745 257 ProSiteProfiles TPR repeat profile. 112 145 IPR019734 GO:0005515
Chy03g00745 257 ProSiteProfiles TPR repeat region circular profile. 180 212 - -
Chy03g00745 257 SUPERFAMILY TPR-like 111 231 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00745 - - - csv:101203269 410.223
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00745 Chy-Chr3:9930530 Chy06g02014 Chy-Chr6:24081353 3.32E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g201 . Blo12g01116 . . . . . . . Cmo15g00656 . . . . Sed03g0441 . . Bhi04g01857 Tan11g1227 Cmetu03g1243 . Hepe02g2733 . Lcy10g1268 Cla08g00630 Cam08g1048 Cec08g0634 Cco08g0746 Clacu08g0755 . Cre08g0564 . . Cone17ag0811 . . . . Cme03g00478 . . . . . . . . . . . . . . Car15g00592 . . . . . . . . . . . . . . . . Lsi08g00475 . Chy03g00745 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011996 0 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g00745 Chy_Chr03 FPKM 3.43239 4.137558 0.433207 1.657207 1.667269 1.673242 1.301784 3.573283 2.989533 2.412993