Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00749 ATGAAATTCCTCCACAATGGGGTCGCCCGCGAGCCTTTCCAAGTTGATTCCGCCCGAACTGTGCTGGTGGGCATGAAATTGGATTCCCACAGTAGAGAGTTGCTTACTTGGGCTTTGGTAAAGGTTGCTCAGCCTGAAATTGTGAATCAAGATGGGAAGTCTTCGCTTCTTTCTCTTGTAAAAGCGTTCGACTCTGTTCTGGCTGTGTATGAAGGTTTTTGTAACTTGAAGCAGGTGGATCTGAAACTCAAAATCTGCAGAGGAGAATCAGCTAGAAAAATATTAGTTCGTGAAGCAAAATCGTATCGTGCTACTAACCTGATTGTTGGGACTGCTCGTAAGCACCACAAAATCCGTTCATCGACTTCCGTTGCCAAGTACTGCGCCAAAAAATTACCCAAAGATTTTTGGGTCCTCGCTGTTCATAATGGGAAAGTGATTTTCGAACGAGAGGGTTGTCCAGTGGCAACAGGGCACTGCCATGGAAATGAGGAACAACGCCATAGCAATTTACTTGCTGCAGTTTACGGATCGTCCGGTAGCTCTCCCAAAGTTCAAAGCGGTGAGAGTTTTGGTTCTCTGTTGGCGAGGGACAGAGATAATCTGGGAATTGGTAAGAATTCTGATCAGGAATTTGAAAAACCCATATTAGTTGGAGCTGATAAACAGAACTGCTCAATTTGTGGATCGGAGTCGAGTTTTGTGGAACATTCTGCAGAGATATCTTCTAGCGATGGACAAACACATGATGAATCTTTGGCTATAGTCCCAGTACAAATAGTCGAGGTAGCTTCGAGCTCGATTACTAAGTTGATCAAGCAATTGCCTGAAGTGAAACCAGGTTGGCCTCTTCTTAGACATGTTGATCAGTCATGTGAATCGGGTCGACAAGCTTCTTCCGATCGTTCGTTGGGCAAGCAAATCTCTGTAGTTCAGTGGGCAATGAGGTTACCTAGCCGGTCTCCTTCATATCCTGCTGCTTTGGATTACAAATCTAATACCTCTGATCAATCTTTGGGTCTTGATGGAGAAAATGGGGCAATGGTTCTGGTGGGTTCTGAACCAGTGCCTTCTCCGCTTTCCTCCGACTTTGATACCGAAACCTTACCGAAAGAATTGGAAGGTTTCCATGAGAAATACTCATCAACTTGTAGATTATTTAATTATCATGAACTCCTTACAGCAACATCAAATTTCTTACCCGAAAATTTGATTGGGAAAGGAGGAAGCAGCCAGGTTTTTAGAGGCTGCCTGCCCGATGGCAAGGAGGTTGCTGTGAAGATCTTGAAGACATCAGAGGATGTTCTGAAGGAGTTCGTTATGGAAGTCGAGATCATTACCTCCTTAAGCCACAAGAATATTATTTCCCTTTTGGGATTTTGCTTTGAAAACAGCAAATTCTTGCTGGTTTATGATTTTTTATCAAGAGGATGTCTTGAAGAAATTTTTCACGGGAATAGAAAGAATCCAAATACATTTGGTTGGAGTGAAAGATACAAGGTAGCTGTTGGTGTAGCTGAGGCGTTGGATTATCTCCATCTAGATGCTCAGCATGTAATCCATAGGGATGTTAAATCGTCAAACATTTTGTTATCTGACGATTTCGAACCGCAGTTGTCAGATTTTGGGCTGGCTAAACGATCGTCAAACTCGTCGCATGTAACCTGTACAGATGTTGCAGGAACCTTTGGTTACCTGGCTCCTGAGTATTTCATGTACGGCAAGGTAAATGACAAGATTGATGTCTATGCCTATGGTGTGGTACTCCTTGAACTTATTTCTGGGAGAAAACCGATAAGCACCGAGTATCCGAAAGGACAAGAAAGCCTGGTCATGTGGGCTAGGCCAATTTTAATCGATGGGAAGGTGTCTCGATTACTTGATCCTACCTTGGGAGGTAACTACAACCAGGACGAGATGGAGCGTGTAGTTCTTGCAGCGAGCCTTTGTATCAGACGTGCCCCACGAGCGAGACCTCCAATGAGCCTTGTTCTAAAGCTTCTCCAAGGTGATGCAGATGTAACCAAGTGGGCGAGGCAACAGATCAACGCTCTAGGGGATTCCAACACTCTAGATGATGAAGTATGTCCTCGATCCGATATCCAATCACACCTCAATCTTGCACTGCTCGATGTCGATGATGACTCGCTCTCCCTGAGCAGCATTGAACATAGTATCTCATTAGAGGACTATTTACAAGGCAGATGGAGCCGTTCATCAAGTTTCGACTAA 2232 44.31 MKFLHNGVAREPFQVDSARTVLVGMKLDSHSRELLTWALVKVAQPEIVNQDGKSSLLSLVKAFDSVLAVYEGFCNLKQVDLKLKICRGESARKILVREAKSYRATNLIVGTARKHHKIRSSTSVAKYCAKKLPKDFWVLAVHNGKVIFEREGCPVATGHCHGNEEQRHSNLLAAVYGSSGSSPKVQSGESFGSLLARDRDNLGIGKNSDQEFEKPILVGADKQNCSICGSESSFVEHSAEISSSDGQTHDESLAIVPVQIVEVASSSITKLIKQLPEVKPGWPLLRHVDQSCESGRQASSDRSLGKQISVVQWAMRLPSRSPSYPAALDYKSNTSDQSLGLDGENGAMVLVGSEPVPSPLSSDFDTETLPKELEGFHEKYSSTCRLFNYHELLTATSNFLPENLIGKGGSSQVFRGCLPDGKEVAVKILKTSEDVLKEFVMEVEIITSLSHKNIISLLGFCFENSKFLLVYDFLSRGCLEEIFHGNRKNPNTFGWSERYKVAVGVAEALDYLHLDAQHVIHRDVKSSNILLSDDFEPQLSDFGLAKRSSNSSHVTCTDVAGTFGYLAPEYFMYGKVNDKIDVYAYGVVLLELISGRKPISTEYPKGQESLVMWARPILIDGKVSRLLDPTLGGNYNQDEMERVVLAASLCIRRAPRARPPMSLVLKLLQGDADVTKWARQQINALGDSNTLDDEVCPRSDIQSHLNLALLDVDDDSLSLSSIEHSISLEDYLQGRWSRSSSFD* 744
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10012602 10015754 - Chy3G057290.1 Chy03g00749 222910

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00749 743 Gene3D Transferase(Phosphotransferase) domain 1 474 686 - -
Chy03g00749 743 SUPERFAMILY Protein kinase-like (PK-like) 380 674 IPR011009 -
Chy03g00749 743 ProSitePatterns Protein kinases ATP-binding region signature. 405 427 IPR017441 GO:0005524
Chy03g00749 743 CDD USP_Like 20 141 - -
Chy03g00749 743 Gene3D Phosphorylase Kinase; domain 1 365 473 - -
Chy03g00749 743 Pfam Protein kinase domain 403 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy03g00749 743 PANTHER OS08G0249100 PROTEIN 14 726 - -
Chy03g00749 743 ProSitePatterns Serine/Threonine protein kinases active-site signature. 519 531 IPR008271 GO:0004672|GO:0006468
Chy03g00749 743 ProSiteProfiles Protein kinase domain profile. 399 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy03g00749 743 SMART serkin_6 399 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy03g00749 743 PANTHER - 14 726 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00749 - - - csv:101203034 1397.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00644 Chy-Chr1:4537201 Chy03g00749 Chy-Chr3:10012602 1.09E-08 dispersed
Chy03g00749 Chy-Chr3:10012602 Chy11g00026 Chy-Chr11:363731 0 dispersed
Chy03g00749 Chy-Chr3:10012602 Chy05g01369 Chy-Chr5:17799292 2.94E-79 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g209 . . . . . . . . Cmo04g02508 Cmo15g00658 . . . . . . . Bhi04g01860 . . . . . Lcy10g1259 Cla08g00627 . . . . . . . . Cone17ag0817 Cone20ag0422 . Csa04g01957 . Cme03g00489 Blo17g00166 Blo18g00172 . Bda13g01465 Bpe02g01658 . Bma01g00797 . . . . . . Car04g02316 Car15g00595 Cpe01g02077 . . . . . . . . . . . . . . . Lsi08g00467 . Chy03g00749 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004130 2 1 2 2 1 1 2 1 1 1 1 1 2 1 0 2 1 1 2 1 1 1 1 1 1 1 1 0 3 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71133 PF00069 Pkinase 6.70E-44 CL0016 Chy PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g00749 Chy_Chr03 FPKM 55.148205 57.648121 42.635353 44.450294 54.032608 44.955086 55.754166 57.089161 59.852818 56.422794