Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00757 ATGCCCAAACCTACGAAGTTTGTTTGTTCGGATTTCCGACTGAGAATTATAGGATTGTCAAATGAGATGAAAGGTCAAGTTATGGTTTTGAAGAAGGTGATGCGGTTACATAAACATACACTATGTAGATTGTTAGCTAGGCTGTACAGTTCTGGTGAACAAACTGTTCCAGTGTCAGATTCAATCAAAAGTATATGTAAAACCATGATGACATGCCATACGTTGGCGCTTGAGACTGCCCTTGATCAAACTGGGATTAGGATTTCACCTGAGATAGCTGAGCCTGTCCTTAGAAGATTTGAGAATGCTGGCATGTTAGCTTATAGGTTCTTTGAATGGGCTTCCAAACAGCGAAACTATGTCCACAGTGTGAGGGCTTACCACTCTATGATTGAGTCTTTAGCTAAGATAAGGCAGTACCAGATGGTGTGGGATCTTGTGAATGCTATGAGGAATAAGGAGATTTTAAATGTTGAGACCTTTTGTATTATCATGAGAAAGTATGCTAGAGCTCAGAAAGTAGAGGAAGCAGTTTATACATTCAATGTCATGGAAAAATATAATATGAAACCAAATGTAGCTGCATTTAATGGATTGCTGTCTGCGCTGTGTAAAGCTAAAAATGTGAGGAAGGCTCAGGAAATTTTTGATAATATGAAGGACCAATTTGTTCCTGACTCAAAAACTTACAGCATACTCATTGAAGGATGGGGTAGGGCTCCGAATCTTCCAAAGGCAAGGGAGATTTATAGAGAAATGATTGATAGCGGCTGCATACCAGATGAAGTGACATACAGCATTATGGTCGATGTTCTTTGTAAGGCCGGAAGAGTCGATGAAGCAGTTGAGATTGTAAAAGAAATGGATTATAATAATTGCAAACTGTCATCGTTTGTCTATAGTGTTTTGGTGCATACGTATGGTGTAGAAAACCGGATTGAAGATGCAGTCTCTACATTCTTGGAGATGGAAAGAAATGGACTTATGGCCGATGTGGCTGCATATAATGCTTTAATCAGTGCTTTTTGTAAAGCAAACAAGATGAAGAATGTCTATAGGGTGTTGAAGGACATGGACTTAAAGGGTGTTAACCCCAATTCAAGGACTTGCAACATCATTATAAACAGCTTAATAGGCCGTGGTGAGACAGATGAGGCATTTAAGATCTTTCGGAGAATGGTCAAAGTGTGTGAACCAGACGTAGACTCCTATACCATGATCATAAAAATGTTTTGTGGGAGGAAGGAACTCAATATGGCTCTTAAAATCTGGAAGTATATGAAGAAGAAGCAGTTTGTTCCGAGCATGCACACATTCTCTGTTCTTATTAATGGACTGTGTCAGATAGGCAATGCTACACAAGCTTGTGTGCTGTTGGAAGAGATGATAGAGAAGGGAATTCGACCTTCTGGTGCCACATTCGGGAGGTCACTTGTTCTCGTTGCATTTAAGGCTAAATGCCATCCAGATTTTACTTATTCGAGCCGAAATGCAAAAGCAGAAAAAGGTTTTCAGGACAAGTCTCAGTGCTTCAATCAACAGGATATGTTAATTGCATATCACAGTGATTTTGCGACGAGGATGCATGATGAAACATGTGATTTTCCGCTTGAACTCTTCTCATTTTGTCCTTGA 1635 39.76 MPKPTKFVCSDFRLRIIGLSNEMKGQVMVLKKVMRLHKHTLCRLLARLYSSGEQTVPVSDSIKSICKTMMTCHTLALETALDQTGIRISPEIAEPVLRRFENAGMLAYRFFEWASKQRNYVHSVRAYHSMIESLAKIRQYQMVWDLVNAMRNKEILNVETFCIIMRKYARAQKVEEAVYTFNVMEKYNMKPNVAAFNGLLSALCKAKNVRKAQEIFDNMKDQFVPDSKTYSILIEGWGRAPNLPKAREIYREMIDSGCIPDEVTYSIMVDVLCKAGRVDEAVEIVKEMDYNNCKLSSFVYSVLVHTYGVENRIEDAVSTFLEMERNGLMADVAAYNALISAFCKANKMKNVYRVLKDMDLKGVNPNSRTCNIIINSLIGRGETDEAFKIFRRMVKVCEPDVDSYTMIIKMFCGRKELNMALKIWKYMKKKQFVPSMHTFSVLINGLCQIGNATQACVLLEEMIEKGIRPSGATFGRSLVLVAFKAKCHPDFTYSSRNAKAEKGFQDKSQCFNQQDMLIAYHSDFATRMHDETCDFPLELFSFCP* 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10148916 10153398 - Chy3G057370.1 Chy03g00757 222918

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00757 544 Pfam PPR repeat family 191 236 IPR002885 -
Chy03g00757 544 Pfam PPR repeat family 331 377 IPR002885 -
Chy03g00757 544 Pfam PPR repeat family 399 448 IPR002885 -
Chy03g00757 544 Gene3D Tetratricopeptide repeat domain 291 394 IPR011990 GO:0005515
Chy03g00757 544 Gene3D Tetratricopeptide repeat domain 221 290 IPR011990 GO:0005515
Chy03g00757 544 Gene3D Tetratricopeptide repeat domain 395 469 IPR011990 GO:0005515
Chy03g00757 544 Gene3D Tetratricopeptide repeat domain 78 220 IPR011990 GO:0005515
Chy03g00757 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 435 469 IPR002885 -
Chy03g00757 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 400 434 IPR002885 -
Chy03g00757 544 Pfam PPR repeat 160 188 IPR002885 -
Chy03g00757 544 Pfam PPR repeat 126 154 IPR002885 -
Chy03g00757 544 Pfam PPR repeat 299 328 IPR002885 -
Chy03g00757 544 Pfam PPR repeat 257 288 IPR002885 -
Chy03g00757 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 157 191 IPR002885 -
Chy03g00757 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 296 330 IPR002885 -
Chy03g00757 544 TIGRFAM PPR: pentatricopeptide repeat domain 403 435 IPR002885 -
Chy03g00757 544 TIGRFAM PPR: pentatricopeptide repeat domain 160 193 IPR002885 -
Chy03g00757 544 TIGRFAM PPR: pentatricopeptide repeat domain 369 395 IPR002885 -
Chy03g00757 544 TIGRFAM PPR: pentatricopeptide repeat domain 195 222 IPR002885 -
Chy03g00757 544 TIGRFAM PPR: pentatricopeptide repeat domain 263 294 IPR002885 -
Chy03g00757 544 TIGRFAM PPR: pentatricopeptide repeat domain 229 262 IPR002885 -
Chy03g00757 544 TIGRFAM PPR: pentatricopeptide repeat domain 334 366 IPR002885 -
Chy03g00757 544 TIGRFAM PPR: pentatricopeptide repeat domain 437 470 IPR002885 -
Chy03g00757 544 TIGRFAM PPR: pentatricopeptide repeat domain 299 330 IPR002885 -
Chy03g00757 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 226 260 IPR002885 -
Chy03g00757 544 SUPERFAMILY TPR-like 122 465 IPR011990 GO:0005515
Chy03g00757 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 261 295 IPR002885 -
Chy03g00757 544 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 38 477 - -
Chy03g00757 544 PANTHER OS03G0761300 PROTEIN 38 477 - -
Chy03g00757 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 192 222 IPR002885 -
Chy03g00757 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 365 IPR002885 -
Chy03g00757 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 366 396 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00757 - - - csv:101222507 877.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00757 Chy-Chr3:10148916 Chy09g00862 Chy-Chr9:11382838 5.13E-17 dispersed
Chy10g00805 Chy-Chr10:14060529 Chy03g00757 Chy-Chr3:10148916 5.38E-52 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g221 . . . . . . . . . Cmo15g00663 . . . . Sed14g0950 . . Bhi04g01871 Tan11g1243 Cmetu09g0635 . Hepe02g2215 . . Cla08g00621 Cam08g1035 Cec08g0624 Cco08g0736 Clacu08g0745 . Cre08g0553 . . . Cone20ag0427 . . . . . . . Bda13g01470 . Bpe14g00395 . Bma02g00206 . . . . . . Car15g00602 . . . . . . . . . . . . . . . . Lsi08g00461 . Chy03g00757 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010579 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g00757 Chy_Chr03 FPKM 64.411407 67.526749 75.542458 73.922142 71.129135 83.463181 70.989014 111.100212 104.815742 92.984711