Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00762 ATGTCTGCCCATAATCGTCGCCCTTCCTTTTCTTCCTCCACAACGTCCTCCTTGGCCAAACGGCAAGCGTCCTCGGCGTCTTCGTCCGACAATGTTGGAAAGGTTATGGCAGTTCCGCCACATTTGGCCAAGAAGCGAGCGCCACTTGGAAACCTAACGAATTTTAAGAATGTATCTCATAGTGCAGCCAAGAGCTCTGGTCCGCCTCCTGTTATGGTGCCTTGTGCAACCAAAGCTGTAAAGGCCAGAAAGAGTTCCCCTGCAAGAACTCGCAGCACTAACTTGCCGGTGACCAATACGACCACAATGCTTGATGTCAAAACGATGAATGCAGTTGCTCCTAGCAACGTTACAGCTTTCTCAAGAACTGACGTCACGGCTGTCTCCAGTTGTATGGATGTCTCTCCCTCTAAATCAGATGGAGTTTCGGTTTCCTTAGATGAAACTATATCGACTTGTGATTCTTTTAAGAGTCCCGACGTCGAGTACTTGGACAATACTGATGTCCCAGCTGTTGATTCTGTTGAGAGGAAAACTAAAAGCAGTCTCTGCATTTCAGGCCCTGCACCAATTAGTTGTCAGCCACCAATTAAAGGTAGCATATGCAGTAGAGATGTACTTACAGAAATGGAAATAGATGGCAACATTGTCGATGTTGATACAGATTTCATGGATCCGCAGCAATGTGCTACAATTGCTTGTGATATTTACAAGCACTTACGAGCATCTGAGGCAAAGAAAAGGCCTTCTACAGATTTCATGGAGAAGATGCAGAAGGATATAAATTCAAATATGCGTGCCATACTGGTTGATTGGCTTGTGGAGGTAGCAGAAGAGTACAGGCTTGTGCCAGACACTCTATATTTGACTGTGAACTACATTGATCGCTTCCTATCTGGGAATTCGATGGATCGGCAACGATTACAGTTGCTTGGTGTTGCTTGCATGATGATTGCTTCAAAATATGAAGAGATATGTGCGCCTCAAGTGGAAGAATTTTGCTACATTACCGATAACACATATTTTAAAGAAGAGGTATTGGAAATGGAATCTTCTGTTTTGAATTACTTGAAGTTCGAAATGACGGCTCCAACACCGAAATGTTTCTTAAGGCGATTTGTTCGTGCTGCTCAAGGCGCCACCGATCAGAGCACTGATGAGATTCCATCAATGCAGTTGGAATGCTTGTCCAACTTCCTTGCCGAATTATCTCTTTTAGAATACAGTATGCTCTGCTACGCACCATCACTTGTAGCTGCCTCGGCAATCTTCTTGGCAAAGTTTATTCTTCTTCCAACTAAGAGACCATGGAATTCCACCTTGCAGCATTATACACATTATCAGCCATCCGATCTTGTCGACTGCGTTAAAGATTTACATGGCCTCTGCTGTAACAACACTCATAATTCTAGCTTACCAGCCATCAGAGAAAAATACAGCCAGCATAAGTACAAGCACGTGGCGAAGAAGTACTGCCCTCTGACGATACCACCGGAGTTCTTCCAGAATCGAACACAGTAA 1521 44.38 MSAHNRRPSFSSSTTSSLAKRQASSASSSDNVGKVMAVPPHLAKKRAPLGNLTNFKNVSHSAAKSSGPPPVMVPCATKAVKARKSSPARTRSTNLPVTNTTTMLDVKTMNAVAPSNVTAFSRTDVTAVSSCMDVSPSKSDGVSVSLDETISTCDSFKSPDVEYLDNTDVPAVDSVERKTKSSLCISGPAPISCQPPIKGSICSRDVLTEMEIDGNIVDVDTDFMDPQQCATIACDIYKHLRASEAKKRPSTDFMEKMQKDINSNMRAILVDWLVEVAEEYRLVPDTLYLTVNYIDRFLSGNSMDRQRLQLLGVACMMIASKYEEICAPQVEEFCYITDNTYFKEEVLEMESSVLNYLKFEMTAPTPKCFLRRFVRAAQGATDQSTDEIPSMQLECLSNFLAELSLLEYSMLCYAPSLVAASAIFLAKFILLPTKRPWNSTLQHYTHYQPSDLVDCVKDLHGLCCNNTHNSSLPAIREKYSQHKYKHVAKKYCPLTIPPEFFQNRTQ* 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10263733 10266708 - Chy3G057420.1 Chy03g00762 222923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00762 506 SUPERFAMILY Cyclin-like 364 493 IPR036915 -
Chy03g00762 506 Gene3D - 249 362 - -
Chy03g00762 506 Gene3D - 235 489 - -
Chy03g00762 506 PANTHER CYCLINS 34 504 IPR039361 -
Chy03g00762 506 SMART Cyclin_C_2 364 493 IPR004367 -
Chy03g00762 506 CDD CYCLIN 362 460 IPR013763 -
Chy03g00762 506 PIRSF Cyclin_A_B_D_E 3 498 IPR039361 -
Chy03g00762 506 Pfam Cyclin, C-terminal domain 364 489 IPR004367 -
Chy03g00762 506 Pfam Cyclin, N-terminal domain 235 361 IPR006671 -
Chy03g00762 506 PANTHER CYCLIN-A1-1 34 504 - -
Chy03g00762 506 SUPERFAMILY Cyclin-like 225 361 IPR036915 -
Chy03g00762 506 MobiDBLite consensus disorder prediction 1 32 - -
Chy03g00762 506 CDD CYCLIN 265 354 IPR013763 -
Chy03g00762 506 SMART cyclin_7 368 461 IPR013763 -
Chy03g00762 506 SMART cyclin_7 271 355 IPR013763 -
Chy03g00762 506 MobiDBLite consensus disorder prediction 1 34 - -
Chy03g00762 506 ProSitePatterns Cyclins signature. 266 297 IPR006671 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00762 Chy-Chr3:10263733 Chy03g01569 Chy-Chr3:17814419 2.93E-102 dispersed
Chy08g00239 Chy-Chr8:5394553 Chy03g00762 Chy-Chr3:10263733 2.38E-41 dispersed
Chy03g00762 Chy-Chr3:10263733 Chy04g00342 Chy-Chr4:3059342 2.17E-103 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00762 K06627 - csv:101221569 986.867