Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00774 ATGCATGCTAGCGGAGATGCCATGACTAAAGATGCACAGTTTGCTTTACGAAGAGTAATTGAGAAATACACAAAAAATACAAGGTTTGCTCTTATGTGTAATCACGTCAATAAGATTATTCCAGCATTACAATCAAGGTGTACCCGCTTTCGATTTGCCCCCCTTGATAACTTTCATGTCACTGAACGACTCAGATATGTTATTGAGGCTGAGAGGTTGGACGTCACTGAGGGTGGCTTAGCTGCTCTTGTTCGACTTTGCAGTGGTGATATGAGAAAGGCCTTAAATATCCTGCAGTCAACGCACATGGCTTCTCAGCATATTACTGAAGAAGCTGTATACCTTTGCACAGGGAACCCAATGCCCAAAGACATTGAGCAAATATCATTTTGGCTGCTGAATGAACCATTTTCTGACTGTTTTAAGCGAATATCTGAAATAAAGACCAGAAAAGGATTGGCTTTGGTTGATATAGTGAGAGAAGTCACTCTGTTCGTTTTTAAGATAGAGATGCCATCGAATATCAGAGTCCAGTTGATTAACGATCTGGCTGATTTAGAGTACAGGATGACTTTCGGATGCAATGACAAGTTACAACTCGGATCGCTCATCTCATCTTTTACAGGAGCTAGATCTGCTCTTGTTGCTGCTGCACAGTAG 660 41.52 MHASGDAMTKDAQFALRRVIEKYTKNTRFALMCNHVNKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVTEGGLAALVRLCSGDMRKALNILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFSDCFKRISEIKTRKGLALVDIVREVTLFVFKIEMPSNIRVQLINDLADLEYRMTFGCNDKLQLGSLISSFTGARSALVAAAQ* 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10484610 10505240 - Chy3G057540.1 Chy03g00774 222935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00774 219 Gene3D - 58 119 - -
Chy03g00774 219 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 105 IPR027417 -
Chy03g00774 219 SUPERFAMILY post-AAA+ oligomerization domain-like 120 208 IPR008921 GO:0003677|GO:0006260
Chy03g00774 219 PANTHER REPLICATION FACTOR C SUBUNIT 5 6 215 - -
Chy03g00774 219 Gene3D - 120 217 - -
Chy03g00774 219 CDD HLD_clamp_RFC 59 117 - -
Chy03g00774 219 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 6 215 - -
Chy03g00774 219 Gene3D - 3 54 IPR027417 -
Chy03g00774 219 Pfam Replication factor C C-terminal domain 120 206 IPR013748 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00774 Chy-Chr3:10484610 Chy06g01971 Chy-Chr6:23730863 2.66E-29 dispersed
Chy03g00774 Chy-Chr3:10484610 Chy03g00775 Chy-Chr3:10505716 6.96E-43 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00774 K10756 - csv:101217230 415.616