Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy03g00788 | ATGGAGTTGAAGAAAACAGAAGTTGAGGAGAAAGTAGAAGAACAACACCACCACCATTTCCATGTATTGGCTGTTGATGATAGTCTTATTGATAGAAAGCTTTTGGAAAAGCTCTTAACAATTTCTTCATGTCAAGTTACCTGTGTTGAGTCTGGTGATAAAGCTCTTAGATATTTGGGCCTTCTTGATCATGAACTTGATCCATTTTCTTCTTCATTTTCTTCCTCACAACTCTCCCAACATCAGGAAGTCAAAGTCAACCTAATCATGACAGATTTCTGTATGCCTGGGATGAGTGGTTATGATCTACTCAAACGACTCAAGGGATCTTATTGGAAGGATATTCCTGTTGTTGTGATGTCATCAGAGAACGAGCCATCAAGAATCAACATGTGTTTAGAAGAAGGCGCAGAGGAATTCCTTCTAAAGCCTCTTCAATTATCAGATGTCAAAAAGCTCGAGCCTCACCTTCAAAAATCCCTCACCCGTTGTGCTTCTGATCAACAAATCAAGGAACAACAAACAACACTTGGAATTGGAATCGGAATCGAAATTGACGACGAAAATAACTCCAAATTAGAAGGGCGTAACAATAGCATTAATAATAACAATAATAATAATAGCTTCAGCAAGAGAAAGGCAGCAACTGCAGAGCATTGTGAAGAAAGATCACGACCAAAACTGAAAGAATTGCAAGCGGGAGTGTAA | 708 | 38.84 | MELKKTEVEEKVEEQHHHHFHVLAVDDSLIDRKLLEKLLTISSCQVTCVESGDKALRYLGLLDHELDPFSSSFSSSQLSQHQEVKVNLIMTDFCMPGMSGYDLLKRLKGSYWKDIPVVVMSSENEPSRINMCLEEGAEEFLLKPLQLSDVKKLEPHLQKSLTRCASDQQIKEQQTTLGIGIGIEIDDENNSKLEGRNNSINNNNNNNSFSKRKAATAEHCEERSRPKLKELQAGV* | 236 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 10786315 | 10789156 | - | Chy3G057680.1 | Chy03g00788 | 222949 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy03g00788 | 235 | MobiDBLite | consensus disorder prediction | 194 | 213 | - | - | |
| Chy03g00788 | 235 | ProSiteProfiles | Response regulatory domain profile. | 21 | 158 | IPR001789 | GO:0000160 | |
| Chy03g00788 | 235 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR ORR4 | 5 | 232 | - | - | |
| Chy03g00788 | 235 | Pfam | Response regulator receiver domain | 22 | 151 | IPR001789 | GO:0000160 | |
| Chy03g00788 | 235 | SMART | REC_2 | 20 | 154 | IPR001789 | GO:0000160 | |
| Chy03g00788 | 235 | CDD | REC_typeA_ARR | 22 | 153 | - | - | |
| Chy03g00788 | 235 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 5 | 232 | IPR045279 | GO:0009736 | |
| Chy03g00788 | 235 | MobiDBLite | consensus disorder prediction | 214 | 229 | - | - | |
| Chy03g00788 | 235 | Gene3D | - | 21 | 230 | - | - | |
| Chy03g00788 | 235 | SUPERFAMILY | CheY-like | 19 | 152 | IPR011006 | - | |
| Chy03g00788 | 235 | MobiDBLite | consensus disorder prediction | 192 | 235 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy03g00788 | Chy-Chr3:10786315 | Chy08g00289 | Chy-Chr8:6751093 | 5.80E-55 | dispersed | |
| Chy03g00788 | Chy-Chr3:10786315 | Chy10g00941 | Chy-Chr10:14996171 | 4.25E-46 | transposed | |
| Chy03g00788 | Chy-Chr3:10786315 | Chy02g02547 | Chy-Chr2:28742346 | 1.04E-42 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 17685 | PF00072 | Response_reg | 8.80E-18 | CL0304 | Chy | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy03g00788 | K14492 | - | csv:101216267 | 391.349 |