Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00832 ATGTCCCGATCGCTGGTGCAGCCGATCGGGCAGAAGCGGCTGACCAACGTCGCCGTAGTTCGTTTGAAGAAACATGGTCTTCGCTTCGAGATTGCCTGTTACAAGAACAAGGTCCTTTCATGGCGCTCTGGCGTGGAGAGAGATTTGGATGAGGTCTTGCAATCGCAAATTGTTTATTCGAATGTTTCAAAAGGAGTTCTTGCAAAAACAAAACATTTGAAAGCAGCTTTTGGTACAGATGATCAGACGGAAATTTGTTTGAAGATTCTTAAAGAAGGGGAACTTCAAGTTGCAGGGAAGGAGAGGGAGGCTCAATTATCCAATCAGTTTCGTGATATTGCAACTATTGTTATGCAGAAGACCTTCAATCCTGAAACTAAACGCCCTTACACCATTAGCATGATTGAACGACTAATGCGTGAAATTCATTTTGCTGTTGATCCAAATCACAGCTCAAAGAAACAGGCACTAGAGGTTATTCATGAGCTCCAGAAACACTTCCCAATTAAACGGTCACCTATGAGGTTACGATATATCGTACCTGAACATAACGTTCCATCTCTCCTTGATAAGTTAAATGCTTGGAGTGCTAGTATCGTTTCCGATGACCAGTCTGGAAATCAGCAACGAAGCATTGTGAGTCCGTGTTTCTTCACTGCAATTGTTGCT 669 43.05 MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVSKGVLAKTKHLKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEHNVPSLLDKLNAWSASIVSDDQSGNQQRSIVSPCFFTAIVA 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11524681 11526012 + Chy3G058120.1 Chy03g00832 222993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00832 223 SUPERFAMILY FYSH domain 13 96 IPR036786 -
Chy03g00832 223 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
Chy03g00832 223 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
Chy03g00832 223 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Chy03g00832 223 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254
Chy03g00832 223 Gene3D - 100 172 IPR037188 -
Chy03g00832 223 PANTHER BNAANNG06530D PROTEIN 1 212 - -
Chy03g00832 223 Gene3D - 1 96 IPR036786 -
Chy03g00832 223 TIGRFAM RNA_SBDS: rRNA metabolism protein, SBDS family 13 199 IPR002140 GO:0042256
Chy03g00832 223 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 212 IPR039100 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00832 K14574 - csv:101215380 412.92