Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00836 ATGGATGTGGAACAAGAAGAGATGCAATTTCTTGGAATCTATGGAATTTTTAGAGAAACTACCAAATTAATCTTCACATGGAGAAGGATTTTCTCCCAAATCACTCTAGCTCTAATTCTCCCTCTCTCCTTCTTGTTCCTCGCTCACATGGAAATCTCCGATCTATTCCTAAGAAAAATCATGTTCGATGAATTCGTATTGGACCAAACTCAAACCAGTACACCCACATTCGATAAACTCTCCGACGTCGTCTCATCCGAGAAGGTCTATTATTTTCTATTTCAAATCATGTACCTGGTAATCTTCATCGTTCTGTCTCTCCTCTCCACCTCTGCCGTCGTCTACACCGTCGCCTCGATCTACACCGGCCGCGATGTCGCTTTCAAGCCGGTGATGAGCGTCGTTCCGAAGGTATGGAAACGCCTCCTCTTAACATTCCTTTGCGTGTTCATCTCTTTCGTCGGCTACTCCATCGCCAGCCTCCTCGTCATCACGTTCCTCTTCTTCTTCATCATTCTCGCCTTCCGCACGGCCGGCGGCGGTGTGTTCCTCTTTCTCTATGTCGTCCAGATCCTGTACCTCGCCGGCGCCTTCTACCTGACGGCGATCTGGCAGCTGTCGAACGTAATCTCCGTTCTGGAAGATTCGTACGGATTCAAAGCGATGGGGAAAAGCTACGGTTTAGTGAAAGGGAAATTAGGAATATCGGTAGTGATAATTTTGTGTCTCAGCCTTCCTTTAGGAACGGTGCGTTTTGTGTTTGGGCATTTGGTGGTCAGAACGTCGTCGTTAGGGATACTGAGTAAGGGTACTTTGGGAATTTTTTGTTTCTTATTGTTTTTCATTTTCTTTTTGTTGAAGCTAGTGACCGAGACGGTGTTGTATTTTGTTTGCAAATCATACCATCATGAAAATATTGACAAGTCTGCCCTTTCAGATCATCTTGAGGTGTATTTGTTGGGAGAGTATGTGCCTTTGAGGCCTAGGGATGTTCAACTTGAGAAATTCCAAGTTTGA 1017 45.13 MDVEQEEMQFLGIYGIFRETTKLIFTWRRIFSQITLALILPLSFLFLAHMEISDLFLRKIMFDEFVLDQTQTSTPTFDKLSDVVSSEKVYYFLFQIMYLVIFIVLSLLSTSAVVYTVASIYTGRDVAFKPVMSVVPKVWKRLLLTFLCVFISFVGYSIASLLVITFLFFFIILAFRTAGGGVFLFLYVVQILYLAGAFYLTAIWQLSNVISVLEDSYGFKAMGKSYGLVKGKLGISVVIILCLSLPLGTVRFVFGHLVVRTSSLGILSKGTLGIFCFLLFFIFFLLKLVTETVLYFVCKSYHHENIDKSALSDHLEVYLLGEYVPLRPRDVQLEKFQV* 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11582426 11583442 - Chy3G058160.1 Chy03g00836 222997

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00836 338 PANTHER PROTEIN, PUTATIVE-RELATED 1 336 - -
Chy03g00836 338 PANTHER OS08G0107100 PROTEIN-RELATED 1 336 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00836 - - - csv:105435860 619.387
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00070 Chy-Chr3:732113 Chy03g00836 Chy-Chr3:11582426 6.16E-46 dispersed
Chy03g00294 Chy-Chr3:3165765 Chy03g00836 Chy-Chr3:11582426 1.89E-95 dispersed
Chy03g00836 Chy-Chr3:11582426 Chy03g00838 Chy-Chr3:11598633 5.73E-73 dispersed
Chy03g00836 Chy-Chr3:11582426 Chy03g00837 Chy-Chr3:11583679 5.72E-19 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1185 Blo01g01318 . Bda01g00686 . . . . Bma01g02103 . . . Cma09g01064 . . . Cpe06g00867 . Bhi04g02156 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo09g01073 . . . Car09g00967 . Cpe02g00865 . . . . . . . . . . . . . . Lsi08g00272 . Chy03g00836 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012007 0 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g00836 Chy_Chr03 FPKM 46.947693 50.188511 55.755974 55.407173 5.418383 4.937916 4.009593 18.750088 18.000494 16.753738