Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00857 ATGTCCTCCGCCCACCCTCCTTCCTCCCCCGCCACCGGTGTCGGTCTCGGCTACGGCATTGCCATTGCCGTCACCATCCTCGTCTTCATCTCCACCGTCATGCTCATCTCCTACGCCTGCATTCGCGTCAAATCGGCCACTACTCGTCCTCCTCGTCCCTCCGCTTCCCTTCCCTCTCCCCCAACCCCCGTCGACAATGTGGTGGTTCTCATGGTTGGATTACACGGCTCCATCATCGAATCCTACCCTAAATTGGTCCTCGGAGAGAGTCGTCGTCTTCCTCCCCCTAACAATGGCCCTTGCTCCATTTGCCTCTCTGATTACAAGCCCCACGATTCTGTTCGATGCATTCCCGATTGTCGACATTGTTTTCACTCTGATTGCGTCGATGAATGGCTTCGTATGAGTGCTACTTGTCCTTTGTGTCGAAATTCCCCAGCTCCAACCCCTGTTGCTACTCCTCTCTCTGAATTTGTGCCTCTGGCTTCCCATGCTAGATATAATCCTTCCATTAATCCAATTGATGTGTTACCTAAAGTGTTAATTAAATTAACTAGTGGAGTTTATTAG 570 51.4 MSSAHPPSSPATGVGLGYGIAIAVTILVFISTVMLISYACIRVKSATTRPPRPSASLPSPPTPVDNVVVLMVGLHGSIIESYPKLVLGESRRLPPPNNGPCSICLSDYKPHDSVRCIPDCRHCFHSDCVDEWLRMSATCPLCRNSPAPTPVATPLSEFVPLASHARYNPSINPIDVLPKVLIKLTSGVY* 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11810930 11811982 - Chy3G058370.1 Chy03g00857 223018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00857 189 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 16 148 - -
Chy03g00857 189 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Chy03g00857 189 SUPERFAMILY RING/U-box 97 148 - -
Chy03g00857 189 Pfam Ring finger domain 101 143 IPR001841 -
Chy03g00857 189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 148 IPR013083 -
Chy03g00857 189 SMART ring_2 101 142 IPR001841 -
Chy03g00857 189 PANTHER RING-H2 FINGER PROTEIN ATL69-RELATED 16 148 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00857 Chy-Chr3:11810930 Chy06g00101 Chy-Chr6:672710 1.84E-32 dispersed
Chy03g00857 Chy-Chr3:11810930 Chy07g01153 Chy-Chr7:16428613 9.22E-34 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00857 - - csv:101221006 318.931