Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00942 ATGGGTAGTCTTGAAATACCCAAATGGCTCAAAGGGTTGCCTTACGCGCCGGAGTTTCGGCCGACTGATACCGAATTTTCCGACCCAATTGCTTACATATCTAAAATTGAAAAGGAAGCTAGTGCTTTTGGGATTTGTAAGATTATCCCTCCATTTCCTAAGCCTTCCAAGAAATACGTCGTTAGTAATTTGAACAAGTCTCTTTTGAGGTCCACTGAGTTAAGTCGTGACCTAAATGGTGCAAAGGAGGGAGATGTTCGGGCTGTTTTTACGACTAGGCATCAGGAATTGGGTCAGAGTGTTAAGAAAACGAAAGGGGTTTTTCAAAATCCGCAGTCTGGAGTTCACAAACAAGTATGGCAAAGTGGGGAGATTTATACATTGGAGCAATTTGAGTCTAAGTCGAAGGTTTTTGCTCGTAGTGTGTTAAGTGGGATTAAGGAGCCGTCTCCTCTTGTCGTTGAATCTTTGTTTTGGAAGGCAGCCAGTGATAAACCCATTTATGTGGAGTATGCAAATGATGTTCCGGGATCTGCTTTTGGAGAACCTGAGGGTAAATTTCGTTATTTTCATAGAAGGAGGAGGAAGAGGAACTTTTATCACCGGAGTAAAGAACTGTCTTCTGAACCTAAGGGTGAGGAAATGGAAACTTTGACGGATTCCCTCTGTCGTGATGGTGGAGGCATTTCTAACAGGAATGATCTGAATACAAGTTCAGAGATGTTGAAGCCATCTACTTCCACGGAGGATGTTTCACACAATTCGCGAGGAAAGAGTTCAGATTCTTGTATTAACATGGAAGGGACGGCAGGTTGGAGGCTTTCAAACAGCCCTTGGAACTTGCAAGTAATTGCACGGTCTCCTGGATCACTTACGCGTTATATGCCAGATGACATTCCGGGGGTTACTTCTCCAATGGTTTACATTGGCATGTTGTTCAGTTGGTTTGCATGGCATGTTGAAGATCATGAGCTGCATAGCATGAATTTTCTTCACGTAGGCTCTCCAAAAACTTGGTATTCCATTCCTGGAGATCAGGCGTTTGCTTTTGAGGAAGTAGTAAGAACTCAGGCATATGGTGGCAGTGTCGACCACCTAGCTGCTCTTACATTACTGGGTGAGAAGACTACGCTTCTATCACCTGAGATAGTGATTGCATCAGGTATTCCTTGCTGCAGGTTAATCCAGAACCCAGGAGAATTTGTTGTCACCTTTCCAAGGGCCTATCACGTTGGGTTCAGTCATGGCTTTAACTGTGGGGAGGCTGCTAATTTTGGAACTCCACAATGGCTCAGTGTGGCCAAGGATGCTGCAGTTCGCAGAGCTGCAATGAATTACCTTCCCATGCTTTCTCATCAGCAGCTCCTATACCTTTTGACAATGTCCTTTGTTTCAAGAGTACCTAGATCATTACTTCCAGGTGTCCGGAGTTCACGGCTTAGAGACCGGCAAAAGGAAGAGAGAGAATTGATGGTGAAGAAAGGGTTTGTTGAGGACATTTTGAGAGAAAATAATATGTTATCAGTTCTCCTTGAAAAAGAATCAAGTTGTCGAGCAGTGTTGTGGAATCCAGACATGCTTTCATATTCAAGTAATTCTCAAGTGGCCAATACAAATTCTGCAGTTGCAACCTCACCCAGAGAAAATGTTTCGTGCAGCCACATGGAAAGTATTGACAATAAGGTCAAGAATATGCAGAATTTCATCGATGAGATGGCCTTGGATTTAGAAACTATGAATGATATTTATTTGGAAAGTGATGATTTGTCATGTGACTTCCAAGTAGATTCTGGGACACTGGCATGTGTGGCATGTGGTATTCTCGGCTTTCCATTTATGTCTGTGGTACAGCCGTCAGAGAAGGCTTCAAAGGAACTTTATGTTGATCATCTGGCTATTCATAAAAGGGGAGGAGTTTTTGGACCAAAGGATGCTCACTGTTCTTCTGTACCTGATGTTAATTGTCTCTCAGAGAATCTTTCAGTAGCATCAGTTCCCAAGTTTGAGAATGGCTGGAATGCGTTTAGTAAATTTCTGAGACCTCGAAGTTTTTGCTTGCAGCATGCTGTGGACATAGTAGAGTTACTGCAGAAGAAAGGTGGAGCAAATATACTTGTTATTTGCCATTCAGATTATCATAAAATAAAGGCAAATGCAGTGGCAATAGCAGAGGAAATTGGCAACAATTTTGTTTACAACGATGTGCGGTTGGATATTGCATCTGAGGAGGATCTGAGGTTAATTGATCTTGCAATTGATGAAGATCGTAATGAATGTCGAGAAGATTGGACCTCTAGATTAGGAATCAACTTGCGGCACTGTATTAAAGTTAGAAAAAGCTCCCCAACAAAGCAAGTTCAGCATGCATTGGCATTGGGTGGTTTGTTCCTCACCAGAGACCATGGTTTCAATCTCTCCGCCCTCAATTGGCTATCTAAAAGATCACGCTCAAAGAAGCTGAATCATCTGCAGCACAGCAAACCATTCCAGAGCATGCCACTTAAGGATGAAGTTGGGGGGGAAAAGTCTGATTGCAGATTAGTGAAAAGTGAAGAAAAGTTTTTCCGATACTACAGAAGGAACAAGAAATTGGGAAATTCTACAGGTGTTGGTTCAGTTACACAGCCAGCTAGCAGTGGAGATTCAAGTGACCTTTGTAATGTTGGGAGTGTTAGAAGCAATGCAGCAGCGTCGATAATTCCTGATTCCAGTGGGACGAGCAGTCAGCAGGAT 2733 42.92 MGSLEIPKWLKGLPYAPEFRPTDTEFSDPIAYISKIEKEASAFGICKIIPPFPKPSKKYVVSNLNKSLLRSTELSRDLNGAKEGDVRAVFTTRHQELGQSVKKTKGVFQNPQSGVHKQVWQSGEIYTLEQFESKSKVFARSVLSGIKEPSPLVVESLFWKAASDKPIYVEYANDVPGSAFGEPEGKFRYFHRRRRKRNFYHRSKELSSEPKGEEMETLTDSLCRDGGGISNRNDLNTSSEMLKPSTSTEDVSHNSRGKSSDSCINMEGTAGWRLSNSPWNLQVIARSPGSLTRYMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHVGSPKTWYSIPGDQAFAFEEVVRTQAYGGSVDHLAALTLLGEKTTLLSPEIVIASGIPCCRLIQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLSVAKDAAVRRAAMNYLPMLSHQQLLYLLTMSFVSRVPRSLLPGVRSSRLRDRQKEERELMVKKGFVEDILRENNMLSVLLEKESSCRAVLWNPDMLSYSSNSQVANTNSAVATSPRENVSCSHMESIDNKVKNMQNFIDEMALDLETMNDIYLESDDLSCDFQVDSGTLACVACGILGFPFMSVVQPSEKASKELYVDHLAIHKRGGVFGPKDAHCSSVPDVNCLSENLSVASVPKFENGWNAFSKFLRPRSFCLQHAVDIVELLQKKGGANILVICHSDYHKIKANAVAIAEEIGNNFVYNDVRLDIASEEDLRLIDLAIDEDRNECREDWTSRLGINLRHCIKVRKSSPTKQVQHALALGGLFLTRDHGFNLSALNWLSKRSRSKKLNHLQHSKPFQSMPLKDEVGGEKSDCRLVKSEEKFFRYYRRNKKLGNSTGVGSVTQPASSGDSSDLCNVGSVRSNAAASIIPDSSGTSSQQD 911
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12993061 12999505 - Chy3G059220.1 Chy03g00942 223103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00942 911 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
Chy03g00942 911 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1 879 - -
Chy03g00942 911 SMART JmjN_1 15 55 IPR003349 -
Chy03g00942 911 SMART cupin_9 273 442 IPR003347 -
Chy03g00942 911 ProSiteProfiles JmjC domain profile. 276 442 IPR003347 -
Chy03g00942 911 MobiDBLite consensus disorder prediction 864 886 - -
Chy03g00942 911 Gene3D Cupin 9 446 - -
Chy03g00942 911 PANTHER LYSINE-SPECIFIC DEMETHYLASE ELF6-RELATED 1 879 - -
Chy03g00942 911 MobiDBLite consensus disorder prediction 222 262 - -
Chy03g00942 911 Pfam JmjC domain, hydroxylase 306 425 IPR003347 -
Chy03g00942 911 Pfam jmjN domain 17 50 IPR003349 -
Chy03g00942 911 SUPERFAMILY Clavaminate synthase-like 274 440 - -
Chy03g00942 911 MobiDBLite consensus disorder prediction 224 262 - -
Chy03g00942 911 MobiDBLite consensus disorder prediction 865 886 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00942 Chy-Chr3:12993061 Chy12g01206 Chy-Chr12:16792783 3.48E-12 dispersed
Chy03g00942 Chy-Chr3:12993061 Chy06g02167 Chy-Chr6:25943311 2.80E-13 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17692 PF02373 JmjC 6.70E-36 CL0029 Chy TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00942 - - csv:101206407 1786.16