Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00953 ATGGATTCAGTGATTAATCCAATGATGAACCATGACAAGCATTTAGATTCTCAGCTATGGCATGCCTGTGCCGGTGGGCTGATTCAATTGCCTACTATTAACTCAAAGGTAGTTTATTTCCCTCAGGGCCACACTGAGCATGCCCAGGGAAATGTCGATTTTGGGAATGCTCGAATTCCTTCAATCATTCCTTGCAGGGTATCTGGCATAAGACATATGGCAGATCCTGAAACTGATGAGGTTTTTGCTAAGATAAAGTTGAGTCCACTGGCAAACAACGAATTCAGTTTGGATAATGAGGATGATTTACTAATTCACAATGAACTTAAGAGTCAGGATAAACCTACCTCGTTTGCAAAGACATTGACACAATCTGATGCAAACAATGGTGGAGGGTTCTCTGTACCTCGTTATTGCGCTGAGACAATCTTCCCTCGGTTGGATTACTCGGTAGAGCCTCCTGTTCAGACTATTCTTGCCAAGGATGTTCATGGTGAGATTTGGAAGTTTAGGCATATATATAGAGGAACACCACGTCGTCATCTTTTGACGACTGGGTGGAGTAGTTTTGTAAATCAGAAGAAACTTGTTGCTGGGGACTCTATTGTTTTCTTGAGGGCAGAAACTGGCGATCTGTGTATTGGAGTTAGACGAGCCAAGAGGGGAATTGGTTGTGGAATTGATTACTCACCTGGCTGGAACCCAACTAATTCAGGCTCTTCACTTTTGGGGTATTCAGATTATATGAGGGAGAGTGAAGGTAGATTGGGGAGAAGAAACTCAAATGGGAATCTGAGCGGGAGAGTGAAGGTCGAATCTGTCATTGAAGCTGCAGTGCTTGCGGCCAGTGGCCAGTCCTTTGAGATTGTGTACTACCCATGTGCTGGTACTCCAGAGTTTGTTGTTAAGGCCTCTAGTTTAAGATCTGCAATGCAAATTCACTGGTATTCTGCTATGAGATTCAAGATGCCTTTTGAAACTGAGGATTCATCTCGAATAAGCTGGTTCATGGGAACTGTATCTTCTATCCAGGCAGCTGATCCTATACGGTGGCCTGATTCTCCATGGCGAATGCTGCAGGTGACATGGGATGAGCCAGATTTGCTGCAAAATGTTAAGAGTGTCAACCCGTGGTTGATTGAAGTGGTAGTAAATATGCCAGCTATCCATGTCTCCCCCTTCTCGCCACCGAGAAAGAAGCCACGTTTTCCACTTCAAGCAGATACTTCTGGTTTTGGTCACCTTCCAATGCCATCGTTTTCCACCAATATCTTTGACACAACCAACCCCTTACAAAGTATTACCGCTAACAAAATTCCTGCAGGCATACAGGGAGCCAGGCATACTCAATTTGGACTCTCTTCACCCAACCTCCAAATCAGCAAACTGATTCCGGGACAATTTTCCCCTGGTCTTAAGCACCTTGATGATGCCACTCCTCTTCCTGGCATCCGAGGTGAAGATATTTTTGGAGGCATGAAAAACCCTGATAATTGTTCTCTCTGGCTACCAATGGGAAATCATATCCAAAGCTCGAAAGAAAGCTCGAAGGAAAGCTCGAAAGAGAGCAAAGAAACAAAACCAGCTCATATAATATTGTTTGGCCAACTTATTTTTCCTAACCAACAGAATTCTAACAGCTGCTCTGGAGATACGATGAATGCATCAGATGCAAATCAAGAGAAAGCATCAAATCTTTCTGACGGTTCTGGTTTGTCATCGCAGCAAAATGGTTCACTTGAGAATTCATCAGAGGGAGGATCTACCTCGTACAATGGTCAGGACAAATCTGGTCTTAGCTTGGACACTGGTCATTGCAAAGTGTTTGTGGAGTTGGAGAATGTTGGTTGTAACCTTGATCTATCATCCCTCAGGTCGTATGAAGAATTATATAGAAAATTAGGCAATATGGTCGGTCTAGGAAGCTCAGAGATGCTGAATTCTGTTCTTTATCAGGATACACTAGGTGCTACAAAGCATGTTGGAGAAGAGCCTTTCAGTGAGTTTCTGAAGAAAGCGCAAAAACTAACCATAAGCACAGATTCTCGAAGTATGGACAACATTGATTCTCGAAGTAGAGACAACATTAGAGGACATTAG 2100 43.43 MDSVINPMMNHDKHLDSQLWHACAGGLIQLPTINSKVVYFPQGHTEHAQGNVDFGNARIPSIIPCRVSGIRHMADPETDEVFAKIKLSPLANNEFSLDNEDDLLIHNELKSQDKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSVEPPVQTILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRAETGDLCIGVRRAKRGIGCGIDYSPGWNPTNSGSSLLGYSDYMRESEGRLGRRNSNGNLSGRVKVESVIEAAVLAASGQSFEIVYYPCAGTPEFVVKASSLRSAMQIHWYSAMRFKMPFETEDSSRISWFMGTVSSIQAADPIRWPDSPWRMLQVTWDEPDLLQNVKSVNPWLIEVVVNMPAIHVSPFSPPRKKPRFPLQADTSGFGHLPMPSFSTNIFDTTNPLQSITANKIPAGIQGARHTQFGLSSPNLQISKLIPGQFSPGLKHLDDATPLPGIRGEDIFGGMKNPDNCSLWLPMGNHIQSSKESSKESSKESKETKPAHIILFGQLIFPNQQNSNSCSGDTMNASDANQEKASNLSDGSGLSSQQNGSLENSSEGGSTSYNGQDKSGLSLDTGHCKVFVELENVGCNLDLSSLRSYEELYRKLGNMVGLGSSEMLNSVLYQDTLGATKHVGEEPFSEFLKKAQKLTISTDSRSMDNIDSRSRDNIRGH* 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13093973 13096447 + Chy3G059330.1 Chy03g00953 223114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00953 699 CDD B3_DNA 117 218 IPR003340 GO:0003677
Chy03g00953 699 MobiDBLite consensus disorder prediction 501 526 - -
Chy03g00953 699 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 679 IPR044835 GO:0003677|GO:0006355|GO:0009725
Chy03g00953 699 Pfam Auxin response factor 277 360 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Chy03g00953 699 Gene3D - 601 686 - -
Chy03g00953 699 PANTHER AUXIN RESPONSE FACTOR 16 9 679 - -
Chy03g00953 699 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
Chy03g00953 699 SUPERFAMILY DNA-binding pseudobarrel domain 107 220 IPR015300 -
Chy03g00953 699 MobiDBLite consensus disorder prediction 545 596 - -
Chy03g00953 699 SMART B3_2 118 220 IPR003340 GO:0003677
Chy03g00953 699 Gene3D - 316 387 - -
Chy03g00953 699 Pfam B3 DNA binding domain 118 219 IPR003340 GO:0003677
Chy03g00953 699 Gene3D - 116 220 IPR015300 -
Chy03g00953 699 ProSiteProfiles PB1 domain profile. 603 683 IPR000270 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00953 Chy-Chr3:13093973 Chy02g02705 Chy-Chr2:29881835 1.07E-77 dispersed
Chy03g01011 Chy-Chr3:13661419 Chy03g00953 Chy-Chr3:13093973 5.95E-106 transposed
Chy08g00840 Chy-Chr8:15902789 Chy03g00953 Chy-Chr3:13093973 2.58E-81 transposed
Chy11g00813 Chy-Chr11:11664482 Chy03g00953 Chy-Chr3:13093973 0 transposed
Chy03g00953 Chy-Chr3:13093973 Chy08g00839 Chy-Chr8:15901478 1.36E-174 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17694 PF02362 B3 1.40E-20 CL0405 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00953 - - csv:101204568 1343.18