Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00960 ATGTTTATGGCGAAGGACTACCAGGATCCGCCACCGGTGCCACTGATAGACGGCGTGGAGATTAGGAAATGGTCGTTCTATAGAGCTCTGATTGCGGAGTTCATGGCGACTCTGCTTTTCCTGTATGTGACGGTGTTGACGGTGATCGGGTACAAAGCGGAAACGCATGGTTTGGGGAAGAAGAATGTGGATTCTTGTGGAGGAGTTGGGATTCTAGGAATTGCTTGGGCTTTTGGAGGAATGATCTTCGTTCTTGTTTACTGGGGCCACATAAACCCAGCAGTGACATTTGGGCTTCTGTTGGGGCGAAAGGTGTCACTCGTGTGGGCCATGATGTACATGGTGGGCCAATGTTTGGGGGCGATCAGTGGAGTTGGACTTGTCAAGGCCTTCCAGAAGGTCCACTTCGAGAAACACGGCGACGGGGCTAATGGGGTTTCCGATGAGTACAGCGTCGGCACTGGACTGGCGGCGGAGATTGTTGGGAGTTTTGTGTTGGTGTACACCGTCTTCTCCGCCACCGACCCTAAACGAAACGCCAGAGATTCCCATGTTCCGGTTTTGGCTCCACTTCCAATTGGGTTTGCAGTTTTCATGGTTCATTTGGCTACAATTCCAATCACGGGCACTGGAATCAACCCAGCTAGAAGCTTGGGATCTGCCGTTGTTTTAAATGATAAAAAGGCTTGGAATAACCATTGGGTATTTTGGGTTGGACCATTTCTTGGGGCAGCCATTGCAGCTTTCTACCATCAATTCATCTTGAGAGCAGGTGCTGTTAAAGCTCTTGGTTCATTTAGAAGCAGCTCACATGTGTGA 819 49.94 MFMAKDYQDPPPVPLIDGVEIRKWSFYRALIAEFMATLLFLYVTVLTVIGYKAETHGLGKKNVDSCGGVGILGIAWAFGGMIFVLVYWGHINPAVTFGLLLGRKVSLVWAMMYMVGQCLGAISGVGLVKAFQKVHFEKHGDGANGVSDEYSVGTGLAAEIVGSFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGSAVVLNDKKAWNNHWVFWVGPFLGAAIAAFYHQFILRAGAVKALGSFRSSSHV* 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13152706 13156163 + Chy3G059400.1 Chy03g00960 223121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00960 272 SUPERFAMILY Aquaporin-like 20 256 IPR023271 -
Chy03g00960 272 ProSitePatterns MIP family signature. 90 98 IPR022357 -
Chy03g00960 272 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 2 269 IPR034294 -
Chy03g00960 272 TIGRFAM MIP: MIP family channel proteins 32 251 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy03g00960 272 PANTHER AQUAPORIN PIP2-1 2 269 - -
Chy03g00960 272 Pfam Major intrinsic protein 20 251 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy03g00960 272 Gene3D Glycerol uptake facilitator protein. 13 272 IPR023271 -
Chy03g00960 272 CDD MIP 28 254 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy03g00960 272 PRINTS Major intrinsic protein family signature 109 128 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy03g00960 272 PRINTS Major intrinsic protein family signature 234 254 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy03g00960 272 PRINTS Major intrinsic protein family signature 194 216 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy03g00960 272 PRINTS Major intrinsic protein family signature 72 96 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy03g00960 272 PRINTS Major intrinsic protein family signature 158 176 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy03g00960 272 PRINTS Major intrinsic protein family signature 28 47 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy03g00960 Chy10g01323 CCT
Chy03g00960 Chy10g01323 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00960 Chy-Chr3:13152706 Chy08g00831 Chy-Chr8:15825011 2.46E-149 dispersed
Chy12g00291 Chy-Chr12:3189958 Chy03g00960 Chy-Chr3:13152706 6.78E-110 transposed
Chy10g01323 Chy-Chr10:17592391 Chy03g00960 Chy-Chr3:13152706 5.04E-144 wgd
Chy03g00960 Chy-Chr3:13152706 Chy08g00828 Chy-Chr8:15814032 4.60E-93 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00960 K09872 - csv:101205700 514.612