Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00967 ATGGCCGCCGTCAAGGGGGTCAAGAGACGGCGGAGAAATGCTTCTTCTTCCTCCCCCACAGTCGTTGGTGGTGGTGGAGATGGTCAACCACACAAGTTAATGCCAAATCAATCCACTGCCACAAAGAGAAGCTCAAAGTTTCGTGGAGTTAGCAGACACCGATGGACAGGAAGATTTGAAGCTCATTTATGGGACAAAGGGTCTTGGAATCCAACGCAAAGGAAGAAAGGGAAACAAGTTTATTTAGGAGCTTATGATGAAGAAGAATCGGCAGCTAGAGCATATGACTTGGCTGCACTTAAGTACTGGGGAACATCCACTTTCACTAATTTTTCGATATCTGATTATGAGAATGAGATTAAGATAATGAAAACTGTGACAAAAGAGGAATACTTAGCCTCTTTAAGAAGGAGAAGTAGCGGTTTCTCAAGAGGTGTATCGAGATATCGAGGAGTCGCGAGACACCATCACAATGGGAGGTGGGAAGCAAGAATTGGAAGAGTTTTTGGTAACAAGTATTTGTACCTTGGAACATATAGTACACAAGAGGAAGCAGCAAGAGCATACGACATAGCTGCAATAGAGTACAGAGGCATAAATGCAGTGACCAACTTCGATTTGAGCACATACATAAGATGGCTTAAACCTCAAACAAATCCAAATCCAAAACAACAACTTTCTCCCCCAATTCCTTCCTCTTTGTTTCCAATTGATTATAACACAAACAATACCCTAAAATCTTCAAATAATGATCTTCATTTTCCAATCTTTCAATCCATCAATAATGATGATAATAATGTTATTATTCCCACAACCCCACAAACTTCCCCTCGCACAGCCCTTGGGCTCCTCCTAAAATCCTCCCTTTTCAAACACCTTGTGGAGAAGAACATTGTGAATGTCAATGAAGAAGAGGATCCTAAAGATAATGAAGTTAGAGGGCTACTTGACTTTGTTGATGATTCTAATAATAATCCTTACTTCAATTTGCATTATCCATGTCAAGGAACCACCAATTTATCACTATCTACTACCCCTTTCCATTTCTCCACTTTGGTTTGA 1062 40.58 MAAVKGVKRRRRNASSSSPTVVGGGGDGQPHKLMPNQSTATKRSSKFRGVSRHRWTGRFEAHLWDKGSWNPTQRKKGKQVYLGAYDEEESAARAYDLAALKYWGTSTFTNFSISDYENEIKIMKTVTKEEYLASLRRRSSGFSRGVSRYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLKPQTNPNPKQQLSPPIPSSLFPIDYNTNNTLKSSNNDLHFPIFQSINNDDNNVIIPTTPQTSPRTALGLLLKSSLFKHLVEKNIVNVNEEEDPKDNEVRGLLDFVDDSNNNPYFNLHYPCQGTTNLSLSTTPFHFSTLV* 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13208870 13212853 - Chy3G059470.1 Chy03g00967 223128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00967 353 CDD AP2 147 208 IPR001471 GO:0003700|GO:0006355
Chy03g00967 353 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 310 - -
Chy03g00967 353 Pfam AP2 domain 45 104 IPR001471 GO:0003700|GO:0006355
Chy03g00967 353 Pfam AP2 domain 147 198 IPR001471 GO:0003700|GO:0006355
Chy03g00967 353 ProSiteProfiles AP2/ERF domain profile. 148 206 IPR001471 GO:0003700|GO:0006355
Chy03g00967 353 SUPERFAMILY DNA-binding domain 45 113 IPR016177 GO:0003677
Chy03g00967 353 SUPERFAMILY DNA-binding domain 147 208 IPR016177 GO:0003677
Chy03g00967 353 Gene3D AP2/ERF domain 147 208 IPR036955 GO:0003700|GO:0006355
Chy03g00967 353 Gene3D AP2/ERF domain 45 114 IPR036955 GO:0003700|GO:0006355
Chy03g00967 353 ProSiteProfiles AP2/ERF domain profile. 46 112 IPR001471 GO:0003700|GO:0006355
Chy03g00967 353 SMART rav1_2 148 212 IPR001471 GO:0003700|GO:0006355
Chy03g00967 353 SMART rav1_2 46 118 IPR001471 GO:0003700|GO:0006355
Chy03g00967 353 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 4 310 - -
Chy03g00967 353 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Chy03g00967 353 PRINTS Ethylene responsive element binding protein signature 188 208 IPR001471 GO:0003700|GO:0006355
Chy03g00967 353 MobiDBLite consensus disorder prediction 1 49 - -
Chy03g00967 353 CDD AP2 45 114 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00967 Chy-Chr3:13208870 Chy05g00712 Chy-Chr5:9314823 1.45E-08 dispersed
Chy07g00211 Chy-Chr7:1699930 Chy03g00967 Chy-Chr3:13208870 1.95E-08 dispersed
Chy01g01930 Chy-Chr1:24516874 Chy03g00967 Chy-Chr3:13208870 9.97E-101 transposed
Chy02g02151 Chy-Chr2:25737097 Chy03g00967 Chy-Chr3:13208870 2.77E-104 transposed
Chy04g01520 Chy-Chr4:21789647 Chy03g00967 Chy-Chr3:13208870 6.54E-10 transposed
Chy04g01521 Chy-Chr4:21792154 Chy03g00967 Chy-Chr3:13208870 1.92E-20 transposed
Chy04g01609 Chy-Chr4:22549547 Chy03g00967 Chy-Chr3:13208870 7.16E-59 transposed
Chy10g01211 Chy-Chr10:16828954 Chy03g00967 Chy-Chr3:13208870 5.17E-99 transposed
Chy03g00967 Chy-Chr3:13208870 Chy08g00813 Chy-Chr8:15713566 5.08E-11 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17696 PF00847 AP2 1.30E-13 CL0081 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00967 - - csv:101217218 677.937