Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00969 ATGCTCCGTCTTCAATGGCTTTCTTCTTCCTTGCTTCCCACATTCAACCCCGTACTCTCCCCGGAAACCTTATCCAACCCCAGACTTTGTACTCTCAACTTCTCTCGCCCACTCCCCACTCTCACTACTACACGCAAACCTTCTCCAAAATGCCAATACTCCTGGAACACGCAGCAACACCAACAATCGGCCTTCGAACCGGCCCCTCAGACCGATTCCCTTTCCCCACAGTCTCGCGCCGGAGCTGCTGCTGCATTGCCTCCGAGGTTTTTTGTTGGTCATTCGATATACAAAGGGAAGGCTGCTCTTACAGTTGAGCCTAGGCCACCAGAGTTTACACCTCTAGATTCAGGAGCGTTCAAAATATCCAGGGAAGGATTGGTTATGCTTCAATTTGCTCCTGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTATTCTCATTATCAGTGACAGAATTGGGAAGTCTAATTGCCCTTGGCCCACGTGAGGCTTGTGAATTTTTTCACGACCCCTATAAGGGAAAAAGTGATGAAGGGAAGGTCAGAAAGATACTAAAAGTGGAGCCTCTTCCAGATGGTTCTGGTCATTTCTTTAATCTCACCGTTCAGAACAAGCTAATCAACGTGGACGAGAGCATTTATATTCCCATCACCAAAGCAGAGTATACTGTACTTGTTGAGGCTTTCAAGTTTATCTTGCCGCACCTCATGGGTTGGCATACGATTGCAAACACCATGACGAAGCCTGAAGATAGCAGCCGAGGAAATACCGCCAATCCCAGATATGGAGGTGACTTTGAATGGAACAGATAG 822 47.57 MLRLQWLSSSLLPTFNPVLSPETLSNPRLCTLNFSRPLPTLTTTRKPSPKCQYSWNTQQHQQSAFEPAPQTDSLSPQSRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISREGLVMLQFAPAAGVRQYDWSRKQVFSLSVTELGSLIALGPREACEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLTVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLMGWHTIANTMTKPEDSSRGNTANPRYGGDFEWNR* 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13217997 13220810 - Chy3G059490.1 Chy03g00969 223130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00969 273 MobiDBLite consensus disorder prediction 250 273 - -
Chy03g00969 273 MobiDBLite consensus disorder prediction 40 78 - -
Chy03g00969 273 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 46 273 IPR013742 GO:0003697|GO:0006355|GO:0006952
Chy03g00969 273 SUPERFAMILY ssDNA-binding transcriptional regulator domain 88 273 IPR009044 GO:0003677|GO:0006355
Chy03g00969 273 MobiDBLite consensus disorder prediction 40 79 - -
Chy03g00969 273 Pfam Whirly transcription factor 96 230 IPR013742 GO:0003697|GO:0006355|GO:0006952
Chy03g00969 273 Gene3D Transcriptional Coactivator Pc4; Chain A 81 254 IPR009044 GO:0003677|GO:0006355
Chy03g00969 273 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 46 273 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00969 Chy-Chr3:13217997 Chy09g00103 Chy-Chr9:859855 2.75E-48 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17697 PF08536 Whirly 3.60E-60 CL0609 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00969 - - csv:101203474 533.487