Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00969 ATGCTCCGTCTTCAATGGCTTTCTTCTTCCTTGCTTCCCACATTCAACCCCGTACTCTCCCCGGAAACCTTATCCAACCCCAGACTTTGTACTCTCAACTTCTCTCGCCCACTCCCCACTCTCACTACTACACGCAAACCTTCTCCAAAATGCCAATACTCCTGGAACACGCAGCAACACCAACAATCGGCCTTCGAACCGGCCCCTCAGACCGATTCCCTTTCCCCACAGTCTCGCGCCGGAGCTGCTGCTGCATTGCCTCCGAGGTTTTTTGTTGGTCATTCGATATACAAAGGGAAGGCTGCTCTTACAGTTGAGCCTAGGCCACCAGAGTTTACACCTCTAGATTCAGGAGCGTTCAAAATATCCAGGGAAGGATTGGTTATGCTTCAATTTGCTCCTGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTATTCTCATTATCAGTGACAGAATTGGGAAGTCTAATTGCCCTTGGCCCACGTGAGGCTTGTGAATTTTTTCACGACCCCTATAAGGGAAAAAGTGATGAAGGGAAGGTCAGAAAGATACTAAAAGTGGAGCCTCTTCCAGATGGTTCTGGTCATTTCTTTAATCTCACCGTTCAGAACAAGCTAATCAACGTGGACGAGAGCATTTATATTCCCATCACCAAAGCAGAGTATACTGTACTTGTTGAGGCTTTCAAGTTTATCTTGCCGCACCTCATGGGTTGGCATACGATTGCAAACACCATGACGAAGCCTGAAGATAGCAGCCGAGGAAATACCGCCAATCCCAGATATGGAGGTGACTTTGAATGGAACAGATAG 822 47.57 MLRLQWLSSSLLPTFNPVLSPETLSNPRLCTLNFSRPLPTLTTTRKPSPKCQYSWNTQQHQQSAFEPAPQTDSLSPQSRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISREGLVMLQFAPAAGVRQYDWSRKQVFSLSVTELGSLIALGPREACEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLTVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLMGWHTIANTMTKPEDSSRGNTANPRYGGDFEWNR* 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13217997 13220810 - Chy3G059490.1 Chy03g00969 223130

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00969 273 MobiDBLite consensus disorder prediction 250 273 - -
Chy03g00969 273 MobiDBLite consensus disorder prediction 40 78 - -
Chy03g00969 273 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 46 273 IPR013742 GO:0003697|GO:0006355|GO:0006952
Chy03g00969 273 SUPERFAMILY ssDNA-binding transcriptional regulator domain 88 273 IPR009044 GO:0003677|GO:0006355
Chy03g00969 273 MobiDBLite consensus disorder prediction 40 79 - -
Chy03g00969 273 Pfam Whirly transcription factor 96 230 IPR013742 GO:0003697|GO:0006355|GO:0006952
Chy03g00969 273 Gene3D Transcriptional Coactivator Pc4; Chain A 81 254 IPR009044 GO:0003677|GO:0006355
Chy03g00969 273 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 46 273 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00969 - - - csv:101203474 533.487
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00969 Chy-Chr3:13217997 Chy09g00103 Chy-Chr9:859855 2.75E-48 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy03g00969 . 46 274 Whirly Transcription Factor Family AT1G14410 68.1 6.6e-90 327.4
Chy09g00103 . 62 212 Whirly Transcription Factor Family AT1G71260 62.9 1.2e-50 196.8
Chy03g00969 . 49 274 Whirly Transcription Factor Family AT2G02740 67.4 1.8e-87 319.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007539 1 2 0 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17697 PF08536 Whirly 3.60E-60 CL0609 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g00969 Chy_Chr03 FPKM 1.8674 1.59264 0.0 0.0 0.223852 0.439044 0.0 0.0 0.0 0.0