Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00980 ATGGGAGTTGGACTTGGACACTCTTCTTCTTGCCTACAAAAGTACACTTCAGGGTATATCAAAGCTTCAGCAAATGCCAATGTAGATGAAGATGAATACTGGCATACTCGTGCCACCGAAGCTAAGAAAGTTGCACAAGGTGCCTTCAATCCTAACCCTGAAATTGTTACCGATACCTTGAACGCCGCCGTTAGTCGAACGATGTTGGGTCACAATAGTACGAGAAGGAGCCTAAGGAAGAAGTATAAAGGACCATGCTTGGCAACGAACCCCATTGATAGATGTTGGAGATGCGATCGAAATTGGGCTAAAAACCGACGGAAGCTAGCAGAATGTCCATTGGGGTTCGGCCACCAAACCATTGGCGGAAAGAGAGGACCAATCTACGTGGTGACAGACGCGTCTGACGATGACTTGGTTAATCCTAAACCTGGAACCCTACGATATGGTGTGATCCAAAAAGGCCCACTTTGGATCATCTTCGGGAGAAGCATGATCATTAGGCTGAGTCAAGAGCTAATGATCTCAAGCGACAAGACCATCGACGCTCGGGGGGCTAACGTCCACATTGCCTTTGGCGCTGGTCTCACCATTCAATTCGTCAACAATGTAATCATTCATAACCTTCACATCCATGACATCGTATCCAAATCGGGTGGAATGATTAGAGATTCAGTGGATCATTATGGGTTCAGAACACAAAGCGATGGCGATGGCATCTCCATCTTTGGTTCTTCTCATGTTTGGATCGACCACGTTTCCATGTCCAATTGTCAAGATGGTCTTATTGACGCCATCATGGGTTCCACAGCAATCACTATCTCCAATTGTCATTTCACTCACCACAACGAGGTGATGTTATTTGGAGCGAGCGATAGCTACGCAGAAGACGCAATTATGCAAGTAACCCTAGCATTCAACCACTTTGGGAGAGGATTGGTGCAAAGGATGCCAAGGTGTAGATGGGGTTTCTTCCATGTTGTTAACAATGACTACACTCATTGGCTAATGTACGCTATCGGCGGTAGCCAACATCCTACAATTGTTAGCCAAGGCAATCGTTTCATCGCCCCTCCAAACCCCAACGCCAAACAGATAACAAAGAGAGAATATGCAATGGAAGATGAATGGAAGCATTGGTCATGGAGATCAGAAGGAGATGAGTTGATGAATGGAGCAGTGTTTATTGCATCAGGTGACCAAACAAAAGGGAAGAAGCAAGGTTTATCAAGATATGATATGATTTCCTTCAAGCCAGGAACCTACGTCAGAAGACTTGTACGCCTTTCTGGCACAATTGAATGCACCCCAGGCAAACCATGCTAG 1326 45.78 MGVGLGHSSSCLQKYTSGYIKASANANVDEDEYWHTRATEAKKVAQGAFNPNPEIVTDTLNAAVSRTMLGHNSTRRSLRKKYKGPCLATNPIDRCWRCDRNWAKNRRKLAECPLGFGHQTIGGKRGPIYVVTDASDDDLVNPKPGTLRYGVIQKGPLWIIFGRSMIIRLSQELMISSDKTIDARGANVHIAFGAGLTIQFVNNVIIHNLHIHDIVSKSGGMIRDSVDHYGFRTQSDGDGISIFGSSHVWIDHVSMSNCQDGLIDAIMGSTAITISNCHFTHHNEVMLFGASDSYAEDAIMQVTLAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIVSQGNRFIAPPNPNAKQITKREYAMEDEWKHWSWRSEGDELMNGAVFIASGDQTKGKKQGLSRYDMISFKPGTYVRRLVRLSGTIECTPGKPC* 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13289445 13294748 + Chy3G059600.1 Chy03g00980 223141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00980 441 SMART amb_all 164 361 IPR002022 -
Chy03g00980 441 Pfam Pectate lyase 174 355 IPR002022 -
Chy03g00980 441 Pfam Pectate lyase, N terminus 31 78 IPR007524 GO:0030570
Chy03g00980 441 PANTHER PECTATE LYASE 18-RELATED 26 441 IPR045032 GO:0030570
Chy03g00980 441 Gene3D - 89 434 IPR012334 -
Chy03g00980 441 PRINTS Pollen allergen Amb family signature 316 335 IPR018082 -
Chy03g00980 441 PRINTS Pollen allergen Amb family signature 236 257 IPR018082 -
Chy03g00980 441 PRINTS Pollen allergen Amb family signature 412 435 IPR018082 -
Chy03g00980 441 PRINTS Pollen allergen Amb family signature 112 129 IPR018082 -
Chy03g00980 441 PRINTS Pollen allergen Amb family signature 136 161 IPR018082 -
Chy03g00980 441 PRINTS Pollen allergen Amb family signature 380 404 IPR018082 -
Chy03g00980 441 PRINTS Pollen allergen Amb family signature 172 188 IPR018082 -
Chy03g00980 441 PRINTS Pollen allergen Amb family signature 338 357 IPR018082 -
Chy03g00980 441 SUPERFAMILY Pectin lyase-like 77 402 IPR011050 -
Chy03g00980 441 PANTHER PECTATE LYASE 26 441 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00980 Chy-Chr3:13289445 Chy12g01326 Chy-Chr12:17608593 0 dispersed
Chy10g00978 Chy-Chr10:15262669 Chy03g00980 Chy-Chr3:13289445 0 wgd
Chy03g00980 Chy-Chr3:13289445 Chy08g00790 Chy-Chr8:15533000 2.43E-43 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00980 K01728 - csv:101217922 854.358