Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00986 ATGGTATATCTGTTGCGTGTACCTTGTACTGGATGTGAATTGAAGATGGGAATGTTCCTTTTGACCTTAACCCAACAAAGAATTAAAAAAGGTTGGAAAAACATGTCTTCCTCTAGACCTAGCCAGTCTTCTAGCAACTCTGGGCGGTCGAGACATAGCACCAGAATTATTGCTCAAACATCTGTTGATGCGAAACTCCATGCTGATTTTGAGGAATCTGGGAATTCATTCGACTACTCAAGTTCAGTGCGTGTCTCTAGTGACGTTAGTGGAGATCACCAACCTAGGTCAGACAAAGTTACAACAGCTTATCTCCACCATATACAGAAAGGGAAGCTTATCCAACCATTTGGTTGCTTATTGGCCTTAGATGAAAAAACATTCAAGGTTATTGCATATAGTGAAAATGCCCCTGAAATGTTGACCATGGTCAGTCATGCTGTCCCAAGCATGGGGGATTACCCTGTTCTTGGCATAGGGACAGATGTGAGAACTATTTTCACTGCACCTAGTGCTTCGGCACTGTTGAAGGCCTTGGGCTTTGGGGAGGTTACACTTCTTAATCCCATCCTAGTGCATTGCAAGACTTCTGGAAAACCCTTTTATGCAATTGTGCATCGTGTTACTGGAAGCTTAATCATTGACTTTGAGCCTGTGAAGCCTTATGAAGTTCCAGTAACAGCAGCTGGAGCCCTACAATCATATAAACTTGCAGCCAAAGCAATTACTAGATTGCAGTCCTTGCCTAGTGGGTGCATGGCTAGGCTTTGTGACACAATGGTTCAAGAAGTTTTTGAACTAACTGGTTATGATAGAGTCATGGCTTATAAATTCCATGATGATGATCATGGGGAAGTGATCTCTGAAGTCACAAAGCCTGGTCTTGAGCCATATCTTGGTTTGCATTATCCGGCCACTGACATTCCTCAAGCTGCACGCTTTTTGTTCATGAAAAATAAGGTCCGCATGATTGTTGATTGTCGTGCAAAACATTTAAAAGTGCTCCAAGATGAAAAATTACAGTTTGATCTAACTTTATGCGGATCAACATTAAGGGCTCCACACAGTTGCCACTTACAGTATATGGAAAACATGAACTCAATAGCCTCTTTGGTTATGGCAGTTGTGGTTAATGAAGGGGATGAAGATGCCGAGGGCCCTGCTTTGCAGCAACAAAAGAGAAAGAGACTATGGGGGTTAGTAGTATGTCATAATACAAGTCCCAGATTTGTTCCTTTTCCTCTTAGGTATGCTTGTGAGTTTCTTGCTCAAGTATTTGCTATTCACGTGAACAAGGAATTGGAGTTGGAAAATCAAATTATAGAGAAAAATATTCTGCGTACACAGACACTCTTGTGCGACATGCTAATGCGCGATGCTCCTTTAGGTATTGTGTCAAGGAGTCCTAACATAATGGATCTTGTGAAATCTGATGGGGCTGCCTTGTTATATAAGAACAAAATTTGGCGATTGGGCATGACACCCAACGACTTCCATTTGCGAGACATTGCCTCATGGCTTGCCGAATATCATATGGATTCAACAGGGTTGAGTACTGACAGCTTGTATGATGCAGGATATCCTGGAGCTCTTGCTTTAGGTGATGAAGTATGTGGGATGGCTGCCGTGCGGATAACTACTAATGATATGATTTTTTGGTTTCGGTCTCACACTGCTTTGGAGATTCGGTGGGGTGGAGCAAAGCATGAACATGGTGAGAAGGATGATGGCAGAAAAATGCATCCAAGATCATCTTTCAAGGCTTTCCTTGAAGTAGTGAAAACAAGAAGTTTGCCTTGGAAGGACTACGAAATGGATGCAATCCACTCTTTACAACTGATCCTTCGAAATACTTTTAAAGATACAGATACAGATGAAATAAATCGAAAATCAATTCAAACGACACTTGGTGACCTTAAAATTGAAGGGAGGCAAGAATTGGAATCAGTAACAAGTGAAATGGTCAGGTTAATTGAGACAGCTACGGTGCCGATTTTAGCAGTTGATGTAGATGGGTTAATTAATGGGTGGAATACAAAGATTGCTGAATTGACTGGACTCCCTGTGGATAAAGCTATTGGCAAGCATTTGCTTACGTTAGTGGAAAATACTTCTGTAGAAGTTGTCAAGAAAATGTTGTATTTGGCATTGCAAGGACAAGAAGAGCAAAACGTTCAATTTGAAATCAAGACGCACGGTTCTCATATTGAGGTTGACTCGATCAGGCTTGTTGTAAATGCTTGTGCAAGTAGGGACTTGCGTGAAAATGTTGTGGGGGTCTGTTTTGTAGCACAAGATATCACTGGTCAGAAGATGGTTATGGACAAGTTCACTCGATTAGAAGGTGATTACAAAGCTATTGTACAAAATCCCAATCCATTGATCCCTCCAATATTTGGTTCAGATCAATTTGGATGGTGCTCAGAATGGAATGCTGCAATGACAAAATTAACTGGGTGGTCACGTGAAGAAGTAATTGATAAGATGCTTTTAGGAGAGGTATTTGGCGCTCACAAGTCATGTTGTCGTTTAAAGAATCAAGAAGCTTTTGTTAATCTTGGGGTTGTTTTGAACAATGCCATGAGTGGTCAAGATCCTGAAAAGGTTTCTTTTGGCTTCTTTGGTCGGAACGGGATGTACGTGGAATGTCTTCTATGTGTCAATAAGATCTTGGATAAGGATGGGGTGGTTACTGGGGTTTTTTGCTTTCTGCAGCTTGCTAGTCATGAGTTGCAACAAGCACTAAATATCCAACGATTATGTGAGCAGACTGCTTTGAAGAGATTGAGAGCATTGGGGTACATAAAAAGACACATACAAAATCCTCTTTCTGGGATAATCTTTTCGAGAAGATTATTGGAACGTACCGATTTGGGAACAGAACAGAGGGAAATTCTGCTTACTAGCTTACACTGTCAAAAGCAAATCTCCAAGGTTCTGGAAGAGTCTGACCTTGATCAAATTATTGACGGGTTTATTGATCTGGAAATGGTCGAGTTTACATTGCATGAAGTATTGAAGGTATCAATCAGTCAAGTGATGATAAAGAGCAAAGGAAAGGCTATCCAGATAGTTAATGAGACTGTAGAAGAGGCCATGTCCGAGACCTTATATGGTGATAGTTTGAGGCTTCAACAAGTCTTGGCAGATTTTCTATTGCTATCAGTTAGTTATGCGCCAGCAGGAGGCCAACTGAAAATTTCAACCAACTTGACCAAGGATCAATTAGGAAAGTCGGTTCATCTCGTGCATTTGGAATTCAGGATAACGTATGCTGGAGGCGGTATACCCGAATCGTTGCTGAACGAGATGTTTGGTAGCGAGGAGGAGGCTTCTGAGGAGGGTTTTAGTCTACTCATCAGTAGAAAACTAGTGAAGCTAATGAATGGAGATGTAAGATACATGAGGGAAGCAGGTAAGTCAAGCTTCATCATAACTGTTGAGCTTGCTGCTGCACACAAGGCAAGTATGTAG 3474 41.45 MVYLLRVPCTGCELKMGMFLLTLTQQRIKKGWKNMSSSRPSQSSSNSGRSRHSTRIIAQTSVDAKLHADFEESGNSFDYSSSVRVSSDVSGDHQPRSDKVTTAYLHHIQKGKLIQPFGCLLALDEKTFKVIAYSENAPEMLTMVSHAVPSMGDYPVLGIGTDVRTIFTAPSASALLKALGFGEVTLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPVTAAGALQSYKLAAKAITRLQSLPSGCMARLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVISEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHLKVLQDEKLQFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNEGDEDAEGPALQQQKRKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKELELENQIIEKNILRTQTLLCDMLMRDAPLGIVSRSPNIMDLVKSDGAALLYKNKIWRLGMTPNDFHLRDIASWLAEYHMDSTGLSTDSLYDAGYPGALALGDEVCGMAAVRITTNDMIFWFRSHTALEIRWGGAKHEHGEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNTFKDTDTDEINRKSIQTTLGDLKIEGRQELESVTSEMVRLIETATVPILAVDVDGLINGWNTKIAELTGLPVDKAIGKHLLTLVENTSVEVVKKMLYLALQGQEEQNVQFEIKTHGSHIEVDSIRLVVNACASRDLRENVVGVCFVAQDITGQKMVMDKFTRLEGDYKAIVQNPNPLIPPIFGSDQFGWCSEWNAAMTKLTGWSREEVIDKMLLGEVFGAHKSCCRLKNQEAFVNLGVVLNNAMSGQDPEKVSFGFFGRNGMYVECLLCVNKILDKDGVVTGVFCFLQLASHELQQALNIQRLCEQTALKRLRALGYIKRHIQNPLSGIIFSRRLLERTDLGTEQREILLTSLHCQKQISKVLEESDLDQIIDGFIDLEMVEFTLHEVLKVSISQVMIKSKGKAIQIVNETVEEAMSETLYGDSLRLQQVLADFLLLSVSYAPAGGQLKISTNLTKDQLGKSVHLVHLEFRITYAGGGIPESLLNEMFGSEEEASEEGFSLLISRKLVKLMNGDVRYMREAGKSSFIITVELAAAHKASM* 1158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13388886 13394823 - Chy3G059660.1 Chy03g00986 223147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00986 1157 Coils Coil 431 451 - -
Chy03g00986 1157 TIGRFAM sensory_box: PAS domain S-box protein 657 773 IPR000014 -
Chy03g00986 1157 PANTHER TWO-COMPONENT HISTIDINE KINASE 35 1153 - -
Chy03g00986 1157 Gene3D - 439 612 IPR043150 -
Chy03g00986 1157 SUPERFAMILY PYP-like sensor domain (PAS domain) 656 763 IPR035965 -
Chy03g00986 1157 Pfam PAS fold 653 767 IPR013767 GO:0006355
Chy03g00986 1157 Pfam PAS fold 783 905 IPR013767 GO:0006355
Chy03g00986 1157 PRINTS Phytochrome signature 549 568 IPR001294 GO:0006355|GO:0009584
Chy03g00986 1157 PRINTS Phytochrome signature 352 373 IPR001294 GO:0006355|GO:0009584
Chy03g00986 1157 PRINTS Phytochrome signature 464 484 IPR001294 GO:0006355|GO:0009584
Chy03g00986 1157 PRINTS Phytochrome signature 267 286 IPR001294 GO:0006355|GO:0009584
Chy03g00986 1157 PRINTS Phytochrome signature 582 600 IPR001294 GO:0006355|GO:0009584
Chy03g00986 1157 PRINTS Phytochrome signature 745 762 IPR001294 GO:0006355|GO:0009584
Chy03g00986 1157 PRINTS Phytochrome signature 167 189 IPR001294 GO:0006355|GO:0009584
Chy03g00986 1157 PRINTS Phytochrome signature 672 687 IPR001294 GO:0006355|GO:0009584
Chy03g00986 1157 PRINTS Phytochrome signature 653 669 IPR001294 GO:0006355|GO:0009584
Chy03g00986 1157 PRINTS Phytochrome signature 765 785 IPR001294 GO:0006355|GO:0009584
Chy03g00986 1157 Pfam Phytochrome region 447 621 IPR013515 GO:0006355|GO:0009584
Chy03g00986 1157 SUPERFAMILY PYP-like sensor domain (PAS domain) 797 903 IPR035965 -
Chy03g00986 1157 Pfam GAF domain 255 434 IPR003018 GO:0005515
Chy03g00986 1157 ProSitePatterns Phytochrome chromophore attachment site signature. 352 361 IPR013516 -
Chy03g00986 1157 PANTHER PHYTOCHROME A 35 1153 - -
Chy03g00986 1157 SMART gaf_1 252 444 IPR003018 GO:0005515
Chy03g00986 1157 Pfam PAS fold 103 219 IPR013654 GO:0006355
Chy03g00986 1157 SMART HisKA_10 927 988 IPR003661 GO:0000155|GO:0007165
Chy03g00986 1157 Gene3D - 233 595 IPR029016 -
Chy03g00986 1157 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 988 1146 IPR036890 -
Chy03g00986 1157 SMART pas_2 782 851 IPR000014 -
Chy03g00986 1157 SMART pas_2 652 718 IPR000014 -
Chy03g00986 1157 Gene3D PAS domain 108 355 - -
Chy03g00986 1157 SUPERFAMILY GAF domain-like 232 431 - -
Chy03g00986 1157 CDD PAS 794 905 IPR000014 -
Chy03g00986 1157 ProSiteProfiles PAS repeat profile. 650 720 IPR000014 -
Chy03g00986 1157 CDD PAS 661 767 IPR000014 -
Chy03g00986 1157 Gene3D - 990 1155 IPR036890 -
Chy03g00986 1157 SMART HKATPase_4 1039 1151 IPR003594 -
Chy03g00986 1157 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 252 424 IPR016132 -
Chy03g00986 1157 SUPERFAMILY PYP-like sensor domain (PAS domain) 108 220 IPR035965 -
Chy03g00986 1157 Gene3D PAS domain 645 782 - -
Chy03g00986 1157 PIRSF Phytochrome_conventional 33 1157 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Chy03g00986 1157 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1039 1149 IPR003594 -
Chy03g00986 1157 ProSiteProfiles PAS repeat profile. 783 835 IPR000014 -
Chy03g00986 1157 ProSiteProfiles Histidine kinase domain profile. 934 1153 IPR005467 -
Chy03g00986 1157 Gene3D PAS domain 797 911 - -
Chy03g00986 1157 MobiDBLite consensus disorder prediction 31 53 - -
Chy03g00986 1157 SUPERFAMILY GAF domain-like 442 619 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00529 Chy-Chr1:3758734 Chy03g00986 Chy-Chr3:13388886 0 dispersed
Chy03g00986 Chy-Chr3:13388886 Chy06g00756 Chy-Chr6:5211189 0 dispersed
Chy03g00986 Chy-Chr3:13388886 Chy03g00990 Chy-Chr3:13429003 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00986 K12120 - csv:101208491 2175.21