Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00988 ATGGATCCACCTACTCTCATCAACCAACCTTCATTTCCAACTACCCCTAATGCCAATCCCAATATCACCCCTTTCAATCTTTCTGAGATCTGGCACTTCCCAATTCATGGCGGAACCTCCGTTGACGATTCTGGTCCTGCTCTTGCCCTCAGGATGGCTCATCTCGCTCATAATTTGACCCACTTTGGAGACATTGCCATTGGGAATCCAGAGGTTTCCCCTACTGACTCACTTCCCTTGCAATTGCAGCAGAGACTACCTCATGGTCATGGCGTTTCCAAGAAGCGCCGTCATTCAGACCAAGATTCGCCTAAAGTCAGTTCCACCAGTAATGGCAACAATGCCAATGCCAATAGCAGCGCTGGGAATGATGCTGGTGGAAAACGCGTTAAAACAGCGGCGTGTAGAGATGATAATCACGAATCCAAAATAGAAGCGGAACCCAGATCTGGGAAGACCGAACAGAACTCCCAGCCTACTCCAGAACAACCCAAACAGGATTACATCCATGTGCGAGCGAGAAGGGGCCAAGCAACTGATAGCCATAGTCTGGCCGAAAGGGCTAGAAGGGAAAAGATAAGTGAGAGAATGAAAATTCTACAAGATTTGGTCCCTGGGTGCAATAAGGTGATTGGAAAAGCGCTTGTACTTGATGAGATAATAAATTACATTCAATCTCTTCAGCGTCAGGTTGAGTTTTTGTCAATGAAACTCGAAGCAGTTAATTCGAGAATTGGCCCTGGCATTGAAGTGTTTCCTCCAAAAGATTATGGTCAACAAACATTCGATACAACCGGCGTTGCGTTTGGTTCACAAGCAACAAGAGAATACAGCCGTGGCTCATCACCAGAATGGTTGCATATGCAGATTGGTGGTGGTTTCGAAAGAACGACGTAG 897 46.6 MDPPTLINQPSFPTTPNANPNITPFNLSEIWHFPIHGGTSVDDSGPALALRMAHLAHNLTHFGDIAIGNPEVSPTDSLPLQLQQRLPHGHGVSKKRRHSDQDSPKVSSTSNGNNANANSSAGNDAGGKRVKTAACRDDNHESKIEAEPRSGKTEQNSQPTPEQPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRIGPGIEVFPPKDYGQQTFDTTGVAFGSQATREYSRGSSPEWLHMQIGGGFERTT* 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13411240 13413467 + Chy3G059680.1 Chy03g00988 223149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00988 298 MobiDBLite consensus disorder prediction 86 166 - -
Chy03g00988 298 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 177 227 IPR011598 GO:0046983
Chy03g00988 298 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 175 245 IPR036638 GO:0046983
Chy03g00988 298 Coils Coil 224 244 - -
Chy03g00988 298 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 298 IPR024097 GO:0006355
Chy03g00988 298 SMART finulus 183 233 IPR011598 GO:0046983
Chy03g00988 298 MobiDBLite consensus disorder prediction 104 125 - -
Chy03g00988 298 Gene3D - 174 246 IPR036638 GO:0046983
Chy03g00988 298 MobiDBLite consensus disorder prediction 130 150 - -
Chy03g00988 298 PANTHER BNAC05G07950D PROTEIN 1 298 - -
Chy03g00988 298 CDD bHLH_AtBPE_like 167 252 - -
Chy03g00988 298 Pfam Helix-loop-helix DNA-binding domain 181 228 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02535 Chy-Chr2:28660503 Chy03g00988 Chy-Chr3:13411240 1.98E-94 dispersed
Chy03g00988 Chy-Chr3:13411240 Chy06g00829 Chy-Chr6:5866149 1.08E-45 dispersed
Chy03g00988 Chy-Chr3:13411240 Chy01g00774 Chy-Chr1:5949888 2.52E-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17699 PF00010 HLH 2.50E-08 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00988 - - csv:101209222 580.867