Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy03g00988 | ATGGATCCACCTACTCTCATCAACCAACCTTCATTTCCAACTACCCCTAATGCCAATCCCAATATCACCCCTTTCAATCTTTCTGAGATCTGGCACTTCCCAATTCATGGCGGAACCTCCGTTGACGATTCTGGTCCTGCTCTTGCCCTCAGGATGGCTCATCTCGCTCATAATTTGACCCACTTTGGAGACATTGCCATTGGGAATCCAGAGGTTTCCCCTACTGACTCACTTCCCTTGCAATTGCAGCAGAGACTACCTCATGGTCATGGCGTTTCCAAGAAGCGCCGTCATTCAGACCAAGATTCGCCTAAAGTCAGTTCCACCAGTAATGGCAACAATGCCAATGCCAATAGCAGCGCTGGGAATGATGCTGGTGGAAAACGCGTTAAAACAGCGGCGTGTAGAGATGATAATCACGAATCCAAAATAGAAGCGGAACCCAGATCTGGGAAGACCGAACAGAACTCCCAGCCTACTCCAGAACAACCCAAACAGGATTACATCCATGTGCGAGCGAGAAGGGGCCAAGCAACTGATAGCCATAGTCTGGCCGAAAGGGCTAGAAGGGAAAAGATAAGTGAGAGAATGAAAATTCTACAAGATTTGGTCCCTGGGTGCAATAAGGTGATTGGAAAAGCGCTTGTACTTGATGAGATAATAAATTACATTCAATCTCTTCAGCGTCAGGTTGAGTTTTTGTCAATGAAACTCGAAGCAGTTAATTCGAGAATTGGCCCTGGCATTGAAGTGTTTCCTCCAAAAGATTATGGTCAACAAACATTCGATACAACCGGCGTTGCGTTTGGTTCACAAGCAACAAGAGAATACAGCCGTGGCTCATCACCAGAATGGTTGCATATGCAGATTGGTGGTGGTTTCGAAAGAACGACGTAG | 897 | 46.6 | MDPPTLINQPSFPTTPNANPNITPFNLSEIWHFPIHGGTSVDDSGPALALRMAHLAHNLTHFGDIAIGNPEVSPTDSLPLQLQQRLPHGHGVSKKRRHSDQDSPKVSSTSNGNNANANSSAGNDAGGKRVKTAACRDDNHESKIEAEPRSGKTEQNSQPTPEQPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRIGPGIEVFPPKDYGQQTFDTTGVAFGSQATREYSRGSSPEWLHMQIGGGFERTT* | 299 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 13411240 | 13413467 | + | Chy3G059680.1 | Chy03g00988 | 223149 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy03g00988 | 298 | MobiDBLite | consensus disorder prediction | 86 | 166 | - | - | |
Chy03g00988 | 298 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 177 | 227 | IPR011598 | GO:0046983 | |
Chy03g00988 | 298 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 175 | 245 | IPR036638 | GO:0046983 | |
Chy03g00988 | 298 | Coils | Coil | 224 | 244 | - | - | |
Chy03g00988 | 298 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 1 | 298 | IPR024097 | GO:0006355 | |
Chy03g00988 | 298 | SMART | finulus | 183 | 233 | IPR011598 | GO:0046983 | |
Chy03g00988 | 298 | MobiDBLite | consensus disorder prediction | 104 | 125 | - | - | |
Chy03g00988 | 298 | Gene3D | - | 174 | 246 | IPR036638 | GO:0046983 | |
Chy03g00988 | 298 | MobiDBLite | consensus disorder prediction | 130 | 150 | - | - | |
Chy03g00988 | 298 | PANTHER | BNAC05G07950D PROTEIN | 1 | 298 | - | - | |
Chy03g00988 | 298 | CDD | bHLH_AtBPE_like | 167 | 252 | - | - | |
Chy03g00988 | 298 | Pfam | Helix-loop-helix DNA-binding domain | 181 | 228 | IPR011598 | GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy02g02535 | Chy-Chr2:28660503 | Chy03g00988 | Chy-Chr3:13411240 | 1.98E-94 | dispersed | |
Chy03g00988 | Chy-Chr3:13411240 | Chy06g00829 | Chy-Chr6:5866149 | 1.08E-45 | dispersed | |
Chy03g00988 | Chy-Chr3:13411240 | Chy01g00774 | Chy-Chr1:5949888 | 2.52E-44 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
17699 | PF00010 | HLH | 2.50E-08 | No_clan | Chy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy03g00988 | - | - | csv:101209222 | 580.867 |