Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01005 ATGTCGGGATCTGAAACTGGTGTTATCACCAGTAGAGAACCTTTCGGCGTCGGCGTTCAAAATAGCTCCTTACACTCGCAATCGGGGGCTCAGAATATGCGATTAGCCTTCGGCGCCGATGGGACAGGCTACAAGCCTGTAACTCCTTCGACCTCACCGTCTTACCAATCCTCCATGGCCGGAGTTTCTGGTAATGCCGGAATTGAGGGATCGGCTAGTGGTGGTGGAGGAGGAGGGTCTATGTTGCCTCATGGGTTCAACATAAATTCGGTGGGCAGTGAGCAAATAAAGAGGAAGAGGGGTAGGCCGAGGAAGTATGGACCGGATGGCTCCATGGCTTTAGCTTTGGGTTCTGGGCCGCCATCAGGAACTGGATGTTTTCCTCCTTCAAATATGGCTAATTCTGCTTCTGAAGCTTTGGGCTCACCTAATTCATCGAAGAAAACTAAAGGCAGGCCACTTGGTTCTAAGAAAAAGCAACAATTGGAAGCTTTAGGATCGGCTGGGATTGGATTCACCCCACATGTTATTGATGTGAAGGCTGGAGAGGATGTATCGTCAAAAATAATGTCCTTTTCTCAGAATGGCCCCAGAGCTATATGTATCCTGTCTGCCAATGGGTCAATATCAAATGTGACTTTACGTCAACCTGCTACATCTGGTGGAACTGTTACTTATGAGGGGCGATTTGAAATTTTGTCTCTTTCGGGTTCATTTCTCCTGTCTGAAAATGGTGGTCAGAGGAGCAGAACTGGTGGGTTGAGTGTATCTTTGTCCGGTCCAGATGGTCGAGTTTTAGGTGGTAGTGTGGCGGGTCTTCTCACAGCTTTATCTCCTGTTCAGGTGGTGGTTGGAAGTTTCATAGCCGATGGCAACAAGGAACCGAAGCCAGCCCGACAAAATGAACTCACCACAGCCTTGCCAATGCTAAACACAGCCGGCTTCGGCCATTTGACAGGAGGAGCCAGTAGTCCATCCCATGGGACGCTGAGCGAGTCTTCCGATGGCAGCCCTGACAGTCCCCTCAACAACAGCTCTGGAGGCTGCAACAACAGCAACCATCCACAGGGCATGTCCGGCATGCCATGGAAGTAA 1095 50.14 MSGSETGVITSREPFGVGVQNSSLHSQSGAQNMRLAFGADGTGYKPVTPSTSPSYQSSMAGVSGNAGIEGSASGGGGGGSMLPHGFNINSVGSEQIKRKRGRPRKYGPDGSMALALGSGPPSGTGCFPPSNMANSASEALGSPNSSKKTKGRPLGSKKKQQLEALGSAGIGFTPHVIDVKAGEDVSSKIMSFSQNGPRAICILSANGSISNVTLRQPATSGGTVTYEGRFEILSLSGSFLLSENGGQRSRTGGLSVSLSGPDGRVLGGSVAGLLTALSPVQVVVGSFIADGNKEPKPARQNELTTALPMLNTAGFGHLTGGASSPSHGTLSESSDGSPDSPLNNSSGGCNNSNHPQGMSGMPWK* 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13564868 13567692 + Chy3G059850.1 Chy03g01005 223166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01005 364 CDD DUF296 173 287 IPR005175 -
Chy03g01005 364 Gene3D - 174 307 - -
Chy03g01005 364 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 10 363 IPR039605 GO:0003680
Chy03g01005 364 MobiDBLite consensus disorder prediction 124 150 - -
Chy03g01005 364 MobiDBLite consensus disorder prediction 314 364 - -
Chy03g01005 364 SUPERFAMILY AF0104/ALDC/Ptd012-like 172 289 - -
Chy03g01005 364 Pfam Plants and Prokaryotes Conserved (PCC) domain 174 287 IPR005175 -
Chy03g01005 364 MobiDBLite consensus disorder prediction 70 158 - -
Chy03g01005 364 ProSiteProfiles PPC domain profile profile. 168 309 IPR005175 -
Chy03g01005 364 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 10-LIKE ISOFORM X1 10 363 - -
Chy03g01005 364 MobiDBLite consensus disorder prediction 317 358 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01005 Chy-Chr3:13564868 Chy07g00425 Chy-Chr7:3288150 2.30E-121 dispersed
Chy04g00085 Chy-Chr4:857773 Chy03g01005 Chy-Chr3:13564868 1.11E-44 dispersed
Chy05g01226 Chy-Chr5:16689179 Chy03g01005 Chy-Chr3:13564868 1.36E-48 dispersed
Chy03g01005 Chy-Chr3:13564868 Chy06g02136 Chy-Chr6:25703791 5.19E-73 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01005 - - csv:101211767 682.945