Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01019 ATGGCTGCTTTGATGGATTTGTATGATTGCAGAGAGTTTCAGTCAGATCCATTTGGTGGTGAGTTAATGGAAGCAATTGAACCTTTTATGAAAGTTGCTTCCTCTTCTTATTTTCCTTCTTCTTTTCCGGACTTCTCTTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTATCCCAACAGAGTCTACTTCTTACCCTTCTGATTGCTCTCCTCCGATGACCCATTTATTTTCCGATGGGTTATCGGGTCAAGATTTCCACGGCGTAGAGCAATCACCTTCTATTGGACTTAATTACTTAACCCCTTTTCAGATCCAACAGATCCAATCTCAATTCGGTCTCCAGACACAAATCCAGCCAGTTTGGGGACAGATCAACAACCAGGTAGTAAGAAATCAGAGCAACACCGCCGGAAATCTGCTTGGACCGAGGGGGATTACAATGAAACACGTGGGATCTCCACCGAAATCGACGAAACTATATCGAGGCGTTAGGCAAAGGCATTGGGGAAAATGGGTGGCTGAGATCCGTCTTCCGAGGAACAGAACTCGGCTATGGCTCGGCACCTTCGATACCGCCGAAGAAGCCGCTTTAGCTTACGACAAAGCCGCTTACAAGCTCCGAGGCGACTTCGCCAGACTCAATTTCCCTCACCTCAAGCACCATGGCTCCTCCGTCGGTGGCGATTTCGGCGAGTACAAACCGCTACACTCCGCCGTCGACGCTAAACTCGAAGCCATCTGCCAAACCTTGGCCGAGTCGCAGGCAAAGGGGAAATCGGATCGGAGAAAGTCGAAGTCATCTGGTTCTTCAACCATCGCATCGGGATCTCAGGCCCCAACGGTGATCGATTCCGACGACGATCTAAACCCGGCGGATGCTGGTTCAATTGGGTCGGAGGTCTGTTGCAAGGCGGAGAACTCCTCGTCACCGGTTTCGGCCGAGAGCGACGAGTCAGCAGGGTCTTCGCCGTTATCAGATCTGACGTTCCAGGATTCGACGGATTCGGCATGGGAACAAACTACAGAAAGCTGTATGTTGCAGAAATATCCATCGGAAATCGATTGGGCTTCGATATTCACAAATTGA 1092 49.45 MAALMDLYDCREFQSDPFGGELMEAIEPFMKVASSSYFPSSFPDFSFSSSSSSSSSSSIPTESTSYPSDCSPPMTHLFSDGLSGQDFHGVEQSPSIGLNYLTPFQIQQIQSQFGLQTQIQPVWGQINNQVVRNQSNTAGNLLGPRGITMKHVGSPPKSTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPHLKHHGSSVGGDFGEYKPLHSAVDAKLEAICQTLAESQAKGKSDRRKSKSSGSSTIASGSQAPTVIDSDDDLNPADAGSIGSEVCCKAENSSSPVSAESDESAGSSPLSDLTFQDSTDSAWEQTTESCMLQKYPSEIDWASIFTN* 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13772124 13773215 + Chy3G059990.1 Chy03g01019 223180

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01019 363 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 360 - -
Chy03g01019 363 Pfam AP2 domain 162 210 IPR001471 GO:0003700|GO:0006355
Chy03g01019 363 MobiDBLite consensus disorder prediction 256 291 - -
Chy03g01019 363 ProSiteProfiles AP2/ERF domain profile. 161 218 IPR001471 GO:0003700|GO:0006355
Chy03g01019 363 Gene3D AP2/ERF domain 161 219 IPR036955 GO:0003700|GO:0006355
Chy03g01019 363 CDD AP2 160 220 IPR001471 GO:0003700|GO:0006355
Chy03g01019 363 PRINTS Ethylene responsive element binding protein signature 184 200 IPR001471 GO:0003700|GO:0006355
Chy03g01019 363 PRINTS Ethylene responsive element binding protein signature 162 173 IPR001471 GO:0003700|GO:0006355
Chy03g01019 363 MobiDBLite consensus disorder prediction 268 285 - -
Chy03g01019 363 SUPERFAMILY DNA-binding domain 161 219 IPR016177 GO:0003677
Chy03g01019 363 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 4 360 - -
Chy03g01019 363 MobiDBLite consensus disorder prediction 307 338 - -
Chy03g01019 363 MobiDBLite consensus disorder prediction 51 70 - -
Chy03g01019 363 SMART rav1_2 161 224 IPR001471 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01019 K09286 EREBP; EREBP-like factor - csv:101222833 615.535
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00711 Chy-Chr2:4301477 Chy03g01019 Chy-Chr3:13772124 9.94E-92 dispersed
Chy03g01019 Chy-Chr3:13772124 Chy07g00697 Chy-Chr7:6747463 9.71E-111 dispersed
Chy03g01019 Chy-Chr3:13772124 Chy11g01156 Chy-Chr11:17463009 9.70E-33 transposed
Chy03g01019 Chy-Chr3:13772124 Chy01g00354 Chy-Chr1:2568075 1.07E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g387 . Blo12g00700 Bda01g00877 Bda03g00498 Bpe02g00098 Bpe04g00453 . Bma01g02621 Cmo05g00511 . . . . Car12g00137 Sed04g0131 . Cpe07g00124 Bhi04g00746 Tan02g2374 Cmetu03g0001 . Hepe10g0515 . Lcy13g1578 Cla08g01096 Cam08g1550 Cec08g1123 Cco08g1250 Clacu08g1252 . Cre08g1034 Cone4ag1350 Cone7ag1581 Cone17ag1230 Cone20ag0497 . Csa04g01841 . Cme03g01510 Blo17g00125 Blo18g00138 . . Bpe02g01114 . Bma01g01424 . . . . Cma12g00148 Cma05g00489 Car05g00437 . . . . . . . . . . . . . . . . . Lsi08g00953 . Chy03g01019 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001774 1 2 2 2 2 1 4 2 2 2 2 2 4 2 2 3 2 4 4 2 2 2 2 3 2 2 2 3 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17702 PF00847 AP2 4.80E-15 CL0081 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01019 Chy_Chr03 FPKM 0.0 0.0 0.032459 0.299495 0.340275 0.662095 1.213236 0.076383 0.380617 0.596641