Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01021 ATGACCAACCAGAAAGCTTCCCTTCCCAAATTCAAATCACGAATCGGTGTAGCCTTCACAGTCGCTAGAATTGGGGGATTTATGGCTAATATTTCTAAAAAGAAGCTTTTCAAAAGAACCGAAAATGGGGGAAACGGTGGCGGAGGTTTAGGCCGAGGCAGAGCCATTGCTTCCTCTGTTGATTTGATGAGAGCTTCTTCTCCCACTCGTCTTAACTCTCATATCTCTGTTTCTCAATCCCCTTGGATTTTTCAACTTCCTTCTGCACTCAACATGTTTGACCAAATTACAACTGCCTCTAAAGGCAAACAAATCGTCATGTTTTTGGATTATGATGGCACTCTTTCCCCAATCGTTGAGGATCCCGATAGAGCATTCATGACAAATGAGATGAGAGCAGCAGTGAAAAACATTGCAACTTGTTTTCCAACTGCCATAGTGACTGGAAGACGTAGAGATAAGGTTTATGAGTTCGTTGGGTTGGGAGAGTTGTTCTATGCAGGGAGTCATGGAATGGACATACAAGGCCCAACAAAAGGGTACAATAATAAATACAAAAAAGGCAATGAAGCAGTGCTTTTCCAACCGGCAAGTGAGCTGCTGCCTATGATTGACGAGGTACACAAAACTTTGTCAGAAATAACAAAGTCCATTAATGGAGCTAAAGTGGAAAACAACAAGTTTTGTATTTCTGTGCATTTTCGCTGCGTCGATGAAAAGAGATGGGGTGCATTAGCTGAGCAAGTAAAATCGGTGGTTAATCAGTACCCTAAATTGATTATGAGCTTAGGGAGAAAGGTACTTGAGATTCGGCCAGCAATTAAATGGGACAAAGGCAAAGCTTTGGAATTTTTGCTTGAGTCATTAGGATTTGCAAATTCTAGTGATGTTTTACCGGTATATATCGGAGATGATCGAACCGATGAAGATGCATTTAAGGTTTTGCAGAGTAAAGGATTAGGGTTTGGAATTCTTGTGTCAAAATTTCCCAAGGAAACTTGTGCTTCTTATTCATTGCAAGAACCATCCGAGGTAGAGGAGTTTCTTTGTCGTCTTGTAAATTGGAAAAGATCAATGGGAGCATTATTATCCAAATCCACATTATCGGACTAA 1113 40.79 MTNQKASLPKFKSRIGVAFTVARIGGFMANISKKKLFKRTENGGNGGGGLGRGRAIASSVDLMRASSPTRLNSHISVSQSPWIFQLPSALNMFDQITTASKGKQIVMFLDYDGTLSPIVEDPDRAFMTNEMRAAVKNIATCFPTAIVTGRRRDKVYEFVGLGELFYAGSHGMDIQGPTKGYNNKYKKGNEAVLFQPASELLPMIDEVHKTLSEITKSINGAKVENNKFCISVHFRCVDEKRWGALAEQVKSVVNQYPKLIMSLGRKVLEIRPAIKWDKGKALEFLLESLGFANSSDVLPVYIGDDRTDEDAFKVLQSKGLGFGILVSKFPKETCASYSLQEPSEVEEFLCRLVNWKRSMGALLSKSTLSD* 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13803091 13805550 + Chy3G060010.1 Chy03g01021 223182

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01021 370 TIGRFAM T6PP: trehalose-phosphatase 103 353 IPR003337 GO:0003824|GO:0005992
Chy03g01021 370 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 107 316 IPR006379 -
Chy03g01021 370 PANTHER TREHALOSE-PHOSPHATE PHOSPHATASE C-RELATED 29 359 - -
Chy03g01021 370 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 29 359 IPR044651 GO:0004805|GO:0005992
Chy03g01021 370 Pfam Trehalose-phosphatase 108 343 IPR003337 GO:0003824|GO:0005992
Chy03g01021 370 Gene3D - 105 191 IPR023214 -
Chy03g01021 370 Gene3D - 194 362 IPR023214 -
Chy03g01021 370 SUPERFAMILY HAD-like 106 356 IPR036412 -
Chy03g01021 370 CDD HAD_TPP 106 347 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01021 K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12] - csv:101223071 702.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01021 Chy-Chr3:13803091 Chy07g01323 Chy-Chr7:17891795 4.81E-148 dispersed
Chy03g01021 Chy-Chr3:13803091 Chy10g00918 Chy-Chr10:14841488 4.92E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g389 . . Bda01g00879 . . . . . Cmo05g00514 . . . . . Sed04g0134 . . Bhi04g00748 Tan02g2378 Cmetu03g2140 . Hepe10g0513 . Lcy13g1576 Cla08g01098 Cam08g1552 Cec08g1125 Cco08g1252 Clacu08g1254 . Cre08g1036 . . Cone17ag1228 Cone20ag0499 . . . Cme03g01512 Blo17g00124 Blo18g00136 . Bda13g01408 Bpe02g01116 Bpe14g00448 . Bma02g00147 . . . . Cma05g00491 Car05g00440 . Cpe11g00430 . . . . . . . . . . . . . . . Lsi08g00955 . Chy03g01021 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000449 7 3 6 4 6 3 3 3 3 3 3 3 3 3 3 3 3 4 3 3 3 3 3 3 3 4 3 10 12 1 117
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01021 Chy_Chr03 FPKM 4.301522 4.196013 226.339188 228.567307 857.821777 913.115723 825.269653 82.375549 81.73893 82.530975