Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01034 ATGGAGAAACTTCCTTTCGCATTTGCCTTCTTTCTCGCTCTATCCAACTTCTTCTCCCTTTTTGTCAATGCATTTACCGCCTCGGGATGGGCTCCCGCCCATGCTACCTTTTATGGCGAGAGCGATGCCTCTGGAACAATGGGTGGAGCTTGTGGGTATGGGAACTTATACCAGACGGGTTACGGGACGAGGACAGCAGCGCTGAGCACAGCATTGTTCAACGACGGAGCATCGTGCGGTCAGTGTTTCAAGATCATATGCGATTACAAGACAGATCCACGGTGGTGCATTAAAGGCGCATCGGTGACGATAACAGCAACAAATTTCTGCCCACCAAACTACGCTCTACCAAACAACAATGGAGGGTGGTGTAACCCTCCGCTTAAGCACTTCGACATGGCTCAGCCTGCTTGGCAGAAGATCGGCATTTACAGGGGCGGAATCATCCCTGTCCTCTACCAAAGGGTTCCTTGCAAGAAGAGAGGAGGTGTAAGATTCACAGTGAATGGGAGAGATTATTTTGAACTTGTTCTAATAACCAACGTGGGAGGAGCTGGTGACATCAAGTCAGTGTCTATTAAAGGCTCTAAATCAAGCAATTGGACCCCAATGTCAAGGAATTGGGGGGCCAATTGGCAATCCAATTCCTATCTAAATGGCCAATCTCTGTCTTTCAAGGTCACCACAAGTGATGGCCAAATCCAAGTTTTCAACAATGCTGTGCCTTCATCTTGGAGATTTGGCCAAACATTTGCCAGCAAAGTCCAATTCAGCTGA 777 48.13 MEKLPFAFAFFLALSNFFSLFVNAFTASGWAPAHATFYGESDASGTMGGACGYGNLYQTGYGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTITATNFCPPNYALPNNNGGWCNPPLKHFDMAQPAWQKIGIYRGGIIPVLYQRVPCKKRGGVRFTVNGRDYFELVLITNVGGAGDIKSVSIKGSKSSNWTPMSRNWGANWQSNSYLNGQSLSFKVTTSDGQIQVFNNAVPSSWRFGQTFASKVQFS* 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13871209 13873109 + Chy3G060140.1 Chy03g01034 223195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01034 258 Pfam Expansin C-terminal domain 164 242 IPR007117 -
Chy03g01034 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 253 IPR007117 -
Chy03g01034 258 PANTHER EXPANSIN-A15 11 257 IPR002963 GO:0009664
Chy03g01034 258 Pfam Lytic transglycolase 65 153 IPR009009 -
Chy03g01034 258 Gene3D - 163 258 IPR036749 -
Chy03g01034 258 Gene3D - 19 159 IPR036908 -
Chy03g01034 258 SMART dpbb_1 65 153 IPR007112 -
Chy03g01034 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 163 IPR007112 -
Chy03g01034 258 PANTHER EXPANSIN 11 257 - -
Chy03g01034 258 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Chy03g01034 258 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Chy03g01034 258 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Chy03g01034 258 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Chy03g01034 258 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576
Chy03g01034 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Chy03g01034 258 SUPERFAMILY Barwin-like endoglucanases 19 181 IPR036908 -
Chy03g01034 258 SUPERFAMILY PHL pollen allergen 160 253 IPR036749 -
Chy03g01034 258 PRINTS Expansin signature 138 151 IPR002963 GO:0009664
Chy03g01034 258 PRINTS Expansin signature 121 138 IPR002963 GO:0009664
Chy03g01034 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Chy03g01034 258 PRINTS Expansin signature 162 174 IPR002963 GO:0009664
Chy03g01034 258 PRINTS Expansin signature 102 112 IPR002963 GO:0009664
Chy03g01034 258 PRINTS Expansin signature 60 74 IPR002963 GO:0009664
Chy03g01034 258 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Chy03g01034 258 PRINTS Expansin signature 174 195 IPR002963 GO:0009664
Chy03g01034 258 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00353 Chy-Chr1:2560711 Chy03g01034 Chy-Chr3:13871209 1.94E-35 dispersed
Chy03g01034 Chy-Chr3:13871209 Chy10g00315 Chy-Chr10:7887475 2.73E-113 dispersed
Chy06g01701 Chy-Chr6:19672998 Chy03g01034 Chy-Chr3:13871209 8.19E-96 dispersed
Chy03g01034 Chy-Chr3:13871209 Chy10g01014 Chy-Chr10:15516342 4.79E-122 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01034 - - csv:101216569 519.235