Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01043 ATGATTTCCGTTTGCTCCGCTAGAACAATTCAAGCTTCACCTTCTTCTATTCACTTATTTTTCCCTCCAAATCGTAAAAGAATCGGTTCGAATGTTCTTCGAATTTCCGCCAATTTCTCCACTAGATGCTCCGATTACGATGAATATAGTGAAGCTCAATCCGAACGGATAGCCAATTACGCCGGAACCAGACTGGAAGAGACCGTGGACGTCAATCCCGGTAAAGTTCGTCTCGATTCTTGGATATCTTGCCGCATTAACGGCATTAGTAGGGCTCGAGTTCAGTCCAGTATTAGAGCGGGATTAGTTTCAGTTAATGGCCGAGTTATCGATAAGGTTTCTCACAATGTAAAAGCTGGGGATGTGATCAATTGTACCATATCCGAGTTGCAACCATTGAGAGCTGAACCTGAAGATATTGATTTGGATATAGTTTATGAAGATGAGCATGTTTTAGTCGTAAACAAACCTGCTCACATGGTTGTTCATCCAGCACCTGGAAATGCGACAGGAACACTAGTAAATGCCATTCTTAACCACTGCAGTCTCCCGATGGTTGCAACATCAACTGACGAACATCAGTCGGATTTGGATGTTTCCGATGATGAGTTCAGTTCAATTGGAGTTTTTTCTAGAGTTTCTGAGGCGCCTATTCGTCCCGGTATTGTGCATAGGTTAGATAAAGGAACTAGTGGATTGCTTGTTGTTGCCAAGGATGAACATTCCCATGCTCACTTATCTGCTCAATTCAAGCAACATTCTATTGAGAGAGTTTATATTAGTCTCACATGTGGAGTTCCACCTTCAACTGCTGGGCGTATTGAGATACCAATTTGCCGTGATCCAAACAATCGTATCCGCATGACTGCAATAGATGGAACGAAAAGCAATCCACATGCAAAGTACGCTGCTAGTAGATACAATGTTATGGAAATTTTAGCCCAAGGAGGTTCTTCATTGGTTGGGTGGAGATTAGAAACAGGCCGCACACATCAGATACGTGCACACGCGAAGTATATGGGAATACCGTTACTTGGAGACGAGGTCTATGGAGGTACCAAGAGCATGGCCATGTCGCTGCTTCGAACTAGAGCATCATCTAATTGTCACGGCCAGCTCATGCAGCTTGTTTCTTCATTAGAGAGGCCTTGTCTTCATGCTCTAACTCTTGGGTTTGTACATCCTCACACAGGGAAGAACATACGTTTTTCATGCCCACCCCCATCAGATTTTACTGAAATTTTGAGTCAGCTTCGCGAAATTGGCACACAAAAGAGTGTTGTCATAAAAGTTGCAGGTTACCAAATCTTAGCTGGGAGCCTCCAGTATCTAGCAAGTAGACTCATCGTCAAATGGCTCGAAAATGAGACATCAAGAAGGTACCTTATCGTTCGTTGCTTGTGTGAAACATATTCCTACTCCCCATGTGCAATGGAACCTCATGATCAACTTAATATTGATGGTAAGCCACCATTGCAATTAAACATTGGATTGCAGTAG 1500 43.2 MISVCSARTIQASPSSIHLFFPPNRKRIGSNVLRISANFSTRCSDYDEYSEAQSERIANYAGTRLEETVDVNPGKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKAGDVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNHCSLPMVATSTDEHQSDLDVSDDEFSSIGVFSRVSEAPIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEIPICRDPNNRIRMTAIDGTKSNPHAKYAASRYNVMEILAQGGSSLVGWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMSLLRTRASSNCHGQLMQLVSSLERPCLHALTLGFVHPHTGKNIRFSCPPPSDFTEILSQLREIGTQKSVVIKVAGYQILAGSLQYLASRLIVKWLENETSRRYLIVRCLCETYSYSPCAMEPHDQLNIDGKPPLQLNIGLQ* 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13925236 13929883 + Chy3G060230.1 Chy03g01043 223204

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01043 499 Pfam S4 domain 76 123 IPR002942 GO:0003723
Chy03g01043 499 CDD S4 76 155 - -
Chy03g01043 499 ProSitePatterns Rlu family of pseudouridine synthase signature. 223 237 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Chy03g01043 499 Gene3D - 62 131 IPR036986 GO:0003723
Chy03g01043 499 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 75 420 - -
Chy03g01043 499 SMART s4_6 76 138 IPR002942 GO:0003723
Chy03g01043 499 TIGRFAM rluA_subfam: pseudouridine synthase, RluA family 76 419 IPR006225 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Chy03g01043 499 PANTHER RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE D 75 420 - -
Chy03g01043 499 SUPERFAMILY Pseudouridine synthase 136 419 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Chy03g01043 499 CDD PseudoU_synth_RluA_like 151 392 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Chy03g01043 499 Pfam RNA pseudouridylate synthase 150 337 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Chy03g01043 499 Gene3D Pseudouridine synthase 133 407 - -
Chy03g01043 499 SUPERFAMILY Alpha-L RNA-binding motif 75 163 - -
Chy03g01043 499 ProSiteProfiles S4 RNA-binding domain profile. 76 149 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01043 K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] - csv:101213921 827.394
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00046 Chy-Chr3:529632 Chy03g01043 Chy-Chr3:13925236 1.23E-07 dispersed
Chy03g01043 Chy-Chr3:13925236 Chy09g00699 Chy-Chr9:9308839 9.84E-16 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g167 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01399 Cam08g1878 Cec08g1455 Cco08g1589 Clacu08g1570 . Cre08g1354 . Cone7ag1911 . . . . . Cme03g01534 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01295 . Chy03g01043 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005129 0 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 0 1 4 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01043 Chy_Chr03 FPKM 0.0 0.0 0.220718 0.0 1.203805 1.091354 1.482149 0.0 0.0 0.0