Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01048 ATGATGAACGGTCATGATGCGGAGCCGTTGGTGTACGTTCACGGCGACCTTGATTTGAAGATCATTGAGGCGCGCCGTTTGCCTAATATGGATATGCTATCGGAGCGTATTCGGCGGTTTTTTACCGTTTTTACTTCTTGTCAGAAACCGTTTTCCAAGAAGAAGGATAAGGAGAATCACCAGCATCACCGGAAGATTATTACTAGTGATCCCTACGTTACCGTATGTCTTGCTGGAGCGACGGTTGCTCGGACACGAGTTATTTCGAATTCGCAGAACCCTGTCTGGAATGAGCACTTCAATATTCCTCTTGCTCATCCGGTCTCGCAGGTGGAGTTTCATGTCAAGGATAATGATGTGTTTGGTGCGGATTTGATTGGTATTGCAACGGTCCCTGCGCGTAGAGTTCTTTCTGGCGAAACCATTGATGATTGGTTTCCGATTATCGGTTCGTTCGGGAAACCGCCGAAGCCGGATTCGGCTGTGCGTTTGGAAATGAAATTCACCAAGTGCGAGGACAATCCTCTGTACCGTTATGGCATTGCGGCCGATCCAGAACATTTTGGCGTTCGGAATTGCTATTTTCCGGTACGACATGGGGGTTCGGTAACGCTTTATCAGGACGCGCACGTTCCTGAGTCCATGTTGGAGAAGATTGAACTGGAAAAGGGGAATCTGTATCAACATGAAAATTGCTGGGAGGATATATGCCATGCAATTTTGGAGGCACACCATTTAGTCTACATTGCCGGTTGGTCCATATATCATAAGGTGAAGCTTGTGAGAGAGCCTTCAAAGCCGTTGCCTAATGGTGGAAATTTGAATTTGGGAGAGTTGCTCAAGTACAAGTCACAAGAAGGGGTGCGAGTCTTGTTATTGGTTTGGGATGACAAGACTTCCCACAGCAAGTTCTTCATTAATACGACTGGAGTGATGCAGACTCATGATGAGGAAACCCGGAAGTTTTTCAAGCACTCTTCTGTGTCATGTGTTCTGTCACCCCGATATGCCAGCAGTAAGCTTAGCATTTTTAAGCAACAGGCACGCTTTATACCATGGTTAAGTTACATGAGAGGACTTTGTGGTATGCTCGTACTTAACCTAGTTTCTCCTTTACTGCAATGTCTGACTGTGAAAGTCGTTGGAACGCTTTTCACCCATCACCAGAAGTGTGTGATTGTGGATACACAAGCATCTGGAAATTATCGGAAGATAACTTCTTTTATTGGAGGGCTTGACCTTTGCGATGGCCGTTATGATACTCCTGAGCACCGGTTATTAAAAGATCTTGACACTGTATTTAATGAAGATTATCATAATCCAACCTTTTCCGGAGGTACAAAGGGTCCTCGGCAGCCATGGCATGATTTACATTGCAAGATTGAAGGGCCCGCGGCATATGATGTGCTTACTAACTTTGAACAACGATGGCGAAAAGCCACAAAATGGTCTGAATTGGGTCAGCGATTCAAAAGAGTATCACATTGGCATGAAGATGCTTTAATAAAGTTGGAACGCATATCTTGGATACTTAGTCCATCTCAATCAGTCCCCAACGACGATCCTTTGTTATGGGTTTCCAAGGAAAATGATCCTGGCAACTGGCATGTTCAGGTTTTCCGATCCATAGATTCAGGATCTTTGAAAGGATTTCCCAAAGATGTTTTTCAAGCTGAGTTGCAGAATCTGGTTTGTGCAAAAAATTTGGTTATTGATAAAAGCATTCAAACAGCATATGTTCAAGCAATAAGATCCGCCCAACACTTCATATACATTGAGAATCAGTATTTTCTTGGATCATCCTTTGCATGGCCTTCGTACAAAGAAGCAGGTGCTGATAATCTCATTCCTATGGAGTTGGCGTTGAAGATTGCTAGTAAGATTAGAGCCAATGAGAGGTTTGCTGTCTACGTTGTGATACCAATGTGGCCTGAAGGGGCTCCCTCTTCTGTTTCTGTGCAAGAAATCCTGTTTTGGCAGGGTCAGACAATCCAAATGATGTACGAAATCATTGGACGAGAGTTGAAATATAAGAATCTTGAGAACGCTCATCCCTCAGACTACTTAAACTTCTACTGTCTTGGCAATAGGGAATCACACGACGACTTGGCATGTTCCTCTGGTCATTCCTCCAAGAGTGAAGATTTGGTTTCAGACTCACAAAAATTCCGTAGATTCATGATATATGTGCATGCGAAAGGAATGATTGTTGATGATGAGTATGTAATAGTAGGGTCAGCAAATATAAATCAAAGATCAATGGCTGGATCAAGGGACACTGAGATTGCGATGGGTGCATATCAACCCAGTTACACATGGGGGAAGATGAAACGACATCCACGAGGCCAGGTTTATGGCTACAGAATGTCGCTCTGGGCAGAACATTTGGGAAACATTGACAATTGCTTCAAGGAGCCAGAAAGTTTAACTTGTGTAAAGGCAGTCAACAAGATGGCTGAAGATAACTGGAAGAAATACACCGCGACGGAGTATGCGCCATTGCAAGGGCACCTCCTAAAGTACCCGATTGAGGTCAGCCAAAGTGGGAAGATAGGTCCGTTGAGTGGACACGAGACTTTCCCTGACTTTGGTGGTAAGGTCCTTGGAGCTCGATCTAACCTCCCTGATGCTCTTACTACGTAA 2643 44.38 MMNGHDAEPLVYVHGDLDLKIIEARRLPNMDMLSERIRRFFTVFTSCQKPFSKKKDKENHQHHRKIITSDPYVTVCLAGATVARTRVISNSQNPVWNEHFNIPLAHPVSQVEFHVKDNDVFGADLIGIATVPARRVLSGETIDDWFPIIGSFGKPPKPDSAVRLEMKFTKCEDNPLYRYGIAADPEHFGVRNCYFPVRHGGSVTLYQDAHVPESMLEKIELEKGNLYQHENCWEDICHAILEAHHLVYIAGWSIYHKVKLVREPSKPLPNGGNLNLGELLKYKSQEGVRVLLLVWDDKTSHSKFFINTTGVMQTHDEETRKFFKHSSVSCVLSPRYASSKLSIFKQQARFIPWLSYMRGLCGMLVLNLVSPLLQCLTVKVVGTLFTHHQKCVIVDTQASGNYRKITSFIGGLDLCDGRYDTPEHRLLKDLDTVFNEDYHNPTFSGGTKGPRQPWHDLHCKIEGPAAYDVLTNFEQRWRKATKWSELGQRFKRVSHWHEDALIKLERISWILSPSQSVPNDDPLLWVSKENDPGNWHVQVFRSIDSGSLKGFPKDVFQAELQNLVCAKNLVIDKSIQTAYVQAIRSAQHFIYIENQYFLGSSFAWPSYKEAGADNLIPMELALKIASKIRANERFAVYVVIPMWPEGAPSSVSVQEILFWQGQTIQMMYEIIGRELKYKNLENAHPSDYLNFYCLGNRESHDDLACSSGHSSKSEDLVSDSQKFRRFMIYVHAKGMIVDDEYVIVGSANINQRSMAGSRDTEIAMGAYQPSYTWGKMKRHPRGQVYGYRMSLWAEHLGNIDNCFKEPESLTCVKAVNKMAEDNWKKYTATEYAPLQGHLLKYPIEVSQSGKIGPLSGHETFPDFGGKVLGARSNLPDALTT* 881
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13966886 13972420 + Chy3G060280.1 Chy03g01048 223209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01048 880 SMART C2_3c 16 145 IPR000008 -
Chy03g01048 880 Pfam Phospholipase D Active site motif 727 753 IPR001736 GO:0003824
Chy03g01048 880 Pfam Phospholipase D Active site motif 384 418 IPR001736 GO:0003824
Chy03g01048 880 Gene3D C2 domain 13 176 IPR035892 -
Chy03g01048 880 SMART pld_4 383 418 IPR001736 GO:0003824
Chy03g01048 880 SMART pld_4 726 753 IPR001736 GO:0003824
Chy03g01048 880 SUPERFAMILY Phospholipase D/nuclease 572 810 - -
Chy03g01048 880 SUPERFAMILY Phospholipase D/nuclease 227 489 - -
Chy03g01048 880 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 14 170 IPR035892 -
Chy03g01048 880 CDD C2_plant_PLD 11 169 - -
Chy03g01048 880 PANTHER PHOSPHOLIPASE D 9 879 IPR015679 -
Chy03g01048 880 Gene3D Endonuclease Chain A 216 501 - -
Chy03g01048 880 ProSiteProfiles C2 domain profile. 1 146 IPR000008 -
Chy03g01048 880 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 383 418 IPR001736 GO:0003824
Chy03g01048 880 Gene3D Endonuclease Chain A 554 772 - -
Chy03g01048 880 Pfam Phospholipase D C terminal 800 870 IPR024632 -
Chy03g01048 880 PIRSF PLD_plant 2 880 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Chy03g01048 880 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 726 753 IPR001736 GO:0003824
Chy03g01048 880 Pfam C2 domain 15 148 IPR000008 -
Chy03g01048 880 PANTHER PHOSPHOLIPASE D 9 879 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00534 Chy-Chr2:3209316 Chy03g01048 Chy-Chr3:13966886 0 dispersed
Chy03g01048 Chy-Chr3:13966886 Chy11g02001 Chy-Chr11:25893372 0 dispersed
Chy03g01048 Chy-Chr3:13966886 Chy03g01122 Chy-Chr3:14515013 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01048 K01115 - csv:101213442 1699.1