Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01050 ATGGCCACGCCGGTGAAAGTGTACGGACCGCCCTTGTCCACCGCCGTCTCCAGAGTACTTGCCTGTCTTCTCGAGAAGGACGTCCAGTTTCAGCTCTTACCGGTGAACATGGCGAAAGGAGAACACAAGAGCCAGGAATATCTCAAGATTCAGCCATTCGGTCAAGTCCCTGCGTTCCAAGACGAAAGCATCTCCCTCTTCGAATCTAGAGCAATCTGCCGCTACATTTGCGATAAACACGCGGAGAAGGGGAATAAAGGATTGTACGGACTGGATCAGTTAGGGAAAGCTTCGATCGATCAATGGATTGAAGCGGAGGGGCAGAGCTTCAATCCGGCAAGCTCGATTCTTGTTTTTCAACTGGCGTTTGCGCCGAGGATGAGGTTGCCGCAGGATGAGAAGGCGATTAAGCAAAACGAGGAGAAGCTGTCGAAGGTGCTTGATGTGTACGAGCAGAGGCTGGGAGAGAGTCGGTATTTGGCCGGAGATGAGTTCTCGTTGGCTGATCTTTCTCATTTGCCGAACGGACATTATCTGGTGAATGTGGCGGACAGGGCGGAGCTTTTCAGGTCGAGGAAGAACGTGGACCGGTGGTGGAATGAAATCTCCGGCAGGGAATCTTGGAAGGAGGTGGTTGAATTGCAGAACAAGGCATCTTCTTGA 663 52.04 MATPVKVYGPPLSTAVSRVLACLLEKDVQFQLLPVNMAKGEHKSQEYLKIQPFGQVPAFQDESISLFESRAICRYICDKHAEKGNKGLYGLDQLGKASIDQWIEAEGQSFNPASSILVFQLAFAPRMRLPQDEKAIKQNEEKLSKVLDVYEQRLGESRYLAGDEFSLADLSHLPNGHYLVNVADRAELFRSRKNVDRWWNEISGRESWKEVVELQNKASS* 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13980546 13981393 + Chy3G060300.1 Chy03g01050 223211

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01050 220 PANTHER GLUTATHIONE S-TRANSFERASE RHO 4 216 - -
Chy03g01050 220 SFLD Main.5: Phi-like 4 215 - -
Chy03g01050 220 Gene3D - 92 212 - -
Chy03g01050 220 SUPERFAMILY Thioredoxin-like 4 84 IPR036249 -
Chy03g01050 220 Gene3D Glutaredoxin 2 90 - -
Chy03g01050 220 SUPERFAMILY GST C-terminal domain-like 85 213 IPR036282 -
Chy03g01050 220 CDD GST_N_Phi 4 79 - -
Chy03g01050 220 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 92 220 IPR010987 -
Chy03g01050 220 SFLD Glutathione Transferase (cytosolic) 4 215 IPR040079 -
Chy03g01050 220 Pfam Glutathione S-transferase, N-terminal domain 4 76 IPR004045 -
Chy03g01050 220 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 84 IPR004045 -
Chy03g01050 220 CDD GST_C_Phi 96 212 IPR034347 -
Chy03g01050 220 Pfam Glutathione S-transferase, C-terminal domain 120 206 IPR004046 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01050 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - csv:101213523 438.343
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01669 Chy-Chr1:22627167 Chy03g01050 Chy-Chr3:13980546 8.59E-30 dispersed
Chy01g01670 Chy-Chr1:22631704 Chy03g01050 Chy-Chr3:13980546 4.60E-61 dispersed
Chy03g01050 Chy-Chr3:13980546 Chy07g01212 Chy-Chr7:16934657 9.35E-13 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g151 . . . . . . . . . . . . . . . . . Bhi04g00084 . . . . . . Cla08g01393 Cam08g1867 Cec08g1446 Cco08g1579 Clacu08g1561 . Cre08g1345 . . . Cone20ag0053 . . . Cme03g01542 . . Bda08g01187 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01285 . Chy03g01050 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005856 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 0 1 1 1 1 5 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01050 Chy_Chr03 FPKM 103.692085 106.439445 90.437393 92.699158 95.029068 88.74189 99.480713 69.605087 63.952362 69.282936