Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01051 ATGCCCCTTCGCCGGAATTCTTCAATTCTGTACAATTTCTTCATCCAGTCAAGAACCCAATACACACTTCTTCTTCTTCATCGCTCATTTCACCTGGTCCGTCAATGTGCAACACAAGAAGCGATTGTTTCAGCTTTAGTCATCGCTGTTAACTCTTGCACTTCCATCTCCAATTGCCGGAAAATTCATGCCCGAGTATTCAAATCTTTGCTTTATAGAGATGGCTTCATTGGGGATCAGCTGGTTACTTGTTATAATAAACTGGGCTATGCTGAAGATGCACTGAAGCTGTTTGATGATATGCCTCATAAAGATTTGGTTTCTTGGAACTCACTGATTTCTGGTTTTTCTCGGTGTCTTCATATGAGTCTCACAGCCTTTTATACCATGAAGTTTGAGATGTCAATTAAACCCAATGAGGTCACAATTCTGTCGATGATATCAGCTTGCAATGGAGCTTTGGATGCAGGGAAGTATATTCATGGTTTTGGGATTAAAGTTGGTGGTACTTTGGAAGTTAAGGTTGCTAATTCTCTCATTAACATGTATGGAAAGTCTGGAGATTTAACATCAGCGTGTAGATTGTTTGAGGCAATTCCAGACCCGAATACAGTATCGTGGAATTCAATCATTGCTGCTCAAGTTACTAATGGCTGTGCACGAGAAGGAATTGATTATTTTAATAAGATGAGAAGGTTTGGAATTGAGCAGGATGAAGGAACTATCCCGGCCCTGCTTCAAGCTTGCCTACATTTGGGTGTAGGAAAATTGGCAGAAAGCATTCATGGTTTAATGTTCTGCACTGGTTTTGGCACAAAAATCACCATAGCAACTGCACTTTTAGATACCTATGCGAAATTGGGAAGATTAAGTGCTTCATATGACGTCTTTAGGGAGGTGGGTTTTGCAGACAGAGTTGCTTGGACCGCCATGCTTGCAGGATATGCTGCACATGGATTAGGTAGGGAAGCAATCAAGCTTTTCGAGAGCATGGCCAATAAAGGTTTGAAGCCTGATCATGTGACTTTTACTCATTTGCTTAGCGCATGTAGTCATTCAGGGCTAGTCAATGAGGGGAAAAGTTACTTCAATGTGATGTCTGAAGTGTATGGAATTGAGCCCAGGGTAGATCATTATTCATGTATGGTTGATCTACTCGGTCGCTGCGGCCTTTTGAATGATGCTTATGAGGTGATACAAAACATGCCCATGGAGCCTAATGCTGGTGTGTGGGGTGCGCTTCTCGGTGCTTGTAGGGTTCATGGTAACATTGAACTTGGTAAGGAAGTTGCAGAGCATTTGATTAATTTGGAACCTTTGGACCCCAGAAACTATATCATGTTATCAAATATGTACTCCGCATCTCGTTCTTGGAAGGATGCTGCCAAAGTGAGGGCCTTGCTAAAGGAGAGAGGTCTGAAAAGAACCCCAGGATATAGCTCTATTGAATATGGAAACAAGAACCACCGCTTCTTCGTGGGTGATCGATCTCACCCTGAGACGGAGAAGATCTATTCCAAGCTCGAAGAATTGCTCGGAAAAATAAGGAAAGCTGGATATAGTTCCAAAACAGAATATGTTCTGCAAGACGTTGAAGAGGAAGTCAAGGAGGATATGATAAACAAGCATAGCGAGAAGTTAGCCATTGCTTTTGGGCTTTTGGTGAGTAAAGAAGGTGAAGCTTTAATCATAACAAAGAATCTTAGAATTTGTGGAGATTGTCATAGCACTGCAAAGCTCATATCATTGATTGAGAAGCGTACCATTGTTATCCGAGATCCAAAACGCTTTCACCATTTCTCTGATGGATTCTGTTCTTGTGCAGATTACTGGTAA 1836 41.78 MPLRRNSSILYNFFIQSRTQYTLLLLHRSFHLVRQCATQEAIVSALVIAVNSCTSISNCRKIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSRCLHMSLTAFYTMKFEMSIKPNEVTILSMISACNGALDAGKYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRFGIEQDEGTIPALLQACLHLGVGKLAESIHGLMFCTGFGTKITIATALLDTYAKLGRLSASYDVFREVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLKPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGACRVHGNIELGKEVAEHLINLEPLDPRNYIMLSNMYSASRSWKDAAKVRALLKERGLKRTPGYSSIEYGNKNHRFFVGDRSHPETEKIYSKLEELLGKIRKAGYSSKTEYVLQDVEEEVKEDMINKHSEKLAIAFGLLVSKEGEALIITKNLRICGDCHSTAKLISLIEKRTIVIRDPKRFHHFSDGFCSCADYW* 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13981845 13983680 + Chy3G060310.1 Chy03g01051 223212

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01051 611 Pfam E+ motif 489 515 IPR046849 -
Chy03g01051 611 TIGRFAM PPR: pentatricopeptide repeat domain 306 339 IPR002885 -
Chy03g01051 611 TIGRFAM PPR: pentatricopeptide repeat domain 341 374 IPR002885 -
Chy03g01051 611 TIGRFAM PPR: pentatricopeptide repeat domain 205 238 IPR002885 -
Chy03g01051 611 Gene3D Tetratricopeptide repeat domain 27 157 IPR011990 GO:0005515
Chy03g01051 611 Gene3D Tetratricopeptide repeat domain 166 262 IPR011990 GO:0005515
Chy03g01051 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 237 IPR002885 -
Chy03g01051 611 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 18 597 - -
Chy03g01051 611 Pfam PPR repeat 107 119 IPR002885 -
Chy03g01051 611 Pfam PPR repeat 205 235 IPR002885 -
Chy03g01051 611 Pfam PPR repeat 378 403 IPR002885 -
Chy03g01051 611 Pfam PPR repeat 81 104 IPR002885 -
Chy03g01051 611 Pfam PPR repeat 177 197 IPR002885 -
Chy03g01051 611 Pfam DYW family of nucleic acid deaminases 519 611 IPR032867 GO:0008270
Chy03g01051 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 338 IPR002885 -
Chy03g01051 611 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 18 597 - -
Chy03g01051 611 Gene3D Tetratricopeptide repeat domain 277 498 IPR011990 GO:0005515
Chy03g01051 611 Pfam PPR repeat family 304 351 IPR002885 -
Chy03g01051 611 Pfam E motif 421 483 IPR046848 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01051 - - - csv:101213281 1196.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01051 Chy-Chr3:13981845 Chy07g00847 Chy-Chr7:11003265 4.32E-15 dispersed
Chy03g01051 Chy-Chr3:13981845 Chy06g01465 Chy-Chr6:15882053 4.99E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g147 . . . . . . . . Cmo05g00332 . . . . . . . . Bhi04g00085 . . . . . . Cla08g01392 . . . . . . . . . Cone20ag0051 . . . Cme03g01544 . . Bda08g01186 . Bpe02g01681 Bpe05g00164 . . . . . . Cma05g00329 Car05g00276 . . . . . . . . . . . . . . . . . Lsi08g01284 . Chy03g01051 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012454 1 1 0 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 0 2 0 0 1 1 0 0 1 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01051 Chy_Chr03 FPKM 2.954887 4.220744 2.882598 2.919468 4.293658 4.100729 4.961044 4.590096 4.100797 4.435864