Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01053 ATGTTTGCAAGATTTGCAGGCCGGCCCAATAATTGTGGTGTAAAAGATGAGTGGACCAAAGTTGGGCCCAACCCAATAACAAATGGTAAAATTCTGAATTGGTTGCGGGTTCGCCTTCGCGCCTCATTTGGAATTCAAGCGGAGTTGATGAATCTTTATCTTCTTCCTCTTCAGCATCGCTCCTTCGTCGATTTGCTCTTGCGGTGTACTCGTCAGAAAGATCTTCAGAAGGGCAAAGCCATTCACGCTCAACTCCTCAGAACTGGTTCTTTCTCTTCGGTTTACCTCACCAACAGTCTTGTTAACTTGTATGCCAAATGTGGAAGTATTGTCAAGGCCAAGCTCGTCTTCGAGAGTATAACCAACAAGGACGTTGTCTCATGGAATTGCCTCATCAATGGCTACTCTCAAAAGGGTACCGTTGGATATTCGTTTGTGATGGAGCTTTTTCAGAGAATGAGAGCGGAGAACACTCTACCGAATGGTCATACTTTTAGCGGGGTTTTCACTGCTGCTTCAAGTTCACCCGAAACTTTTGGTGGTCTACAGGCCCATGCGCTTGCGATCAAGACTTCTAAATTTTATGATGTTTTTGTTGGCAGTTCGCTTATTAATATGTATTGTAAAATTGGGTATCTGCTCGATGCTCGTAAGGTGTTCGACACAATTCCCGAGAGGAATACTGTTTCTTGGGCTACTATGATTTCAGGGTATGCGATGGAAAGGATGGCTTTTGAGGCTTGGGAGTTGTTTTTATTGATGCGTCGTGAAGAGGGGGCCCATGATAAGTTTATCTATACGGGTGTGCTTAGTGCACTGACGGTTCCTGATCTTGTTCACTATGGTAAGCAAATCCATTGTCTTGCCCTTAAAAATGGGTTGTTATCAATTGCTTCTGTGGGGAATGCTCTTGTTACGATGTATGGAAAATGTGGGTGTTTAGATGATGCTCTTAAAACATTTGAATTGTCTGGTGATAAGGACGATATTACATGGTCAGCTATGATAACTGGCTATGCTCAAGCTGGGGACCCGCACGAGGCTTTAAAGTTGTTTTATAATATGCATCTTAATGGGAATAAGCCTAGTGAGTTTACTTTTGTCGGGGTGATCAATGCATGTAGTGACATTGGTGCTCTGGAAGAGGGGAAACAAATACACGGATATTCCCTGAAGGCGGGATATGAGTGCCAGATTTATTTCATGACAGCTTTGGTTGATATGTATGCAAAATGTGGAAGCCTAGTTGATGCCCGAAAGGGGTTTGATTATTTAAAAGAACCGGATATTGTTTTGTGGACTTCCATGATTTCAGGATATGCTCAAAATGGTGAAAATGAAACTGCTTTGACTCTATACTGTAGAATGCAGATGGAAAGGATTCTGCCCCATGAGCTAACTATGGCTAGTGTCTTGAGAGCATGTTCAAGCCTGGCTGCTTTAGAACAAGGTAAGCAAATCCATGCCCAGACGATTAAATATGGATTCAGTCTTGAAGTTCCAATAGGGAGTGCTCTTTCTACCATGTATGCAAAGTGTGGTAGTTTAGAAGATGGGAACCTGGTATTTAGGAGGATGCCTAGTCGAGATATTATGACATGGAATGCGATGATATCTGGTCTTTCTCAAAATGGAGAGGGTCTTAAAGCTCTTGAATTTTTTGAAGAGCTGCGTCATGGCACTGCAAAACCCGACTATGTTACTTTCGTGAATGTTCTTTCTGCATGCAGTCACATGGGATTGGTGGAAAGAGGCAAGGTATATTTCAGGATGATGCTTGATGAGTTCGGAATTGTTCCAAGAGTTGAGCATTATGCTTGCATGGTAGATATTCTAAGTCGTGCAGGTAAGCTACATGAAACGAAAGAGTTCATAGAATCTGCCACTGTTGATCACGGTATGTGTTTATGGCGTATCCTGTTAGGGGCTTGTCGAAACTATCGTAATTATGAACTGGGAGCATATGCAGGGGAGAAACTAATGGAATTAGGTTCACAAGAATCGTCTGCTTATATATTATTATCTAGTATTTATACTGCACTGGGAAGGTCTGATGATGTTGAACGGGTGAGAAAGTTGATGAAACTTCGAGGGGTGAATAAGGAACCAGGTTGTAGTTGGATTGAATTGAAAAGTCAGGTTCATGTGTTTGTAGTTGGCGACCAGATACATCCACAGATTGTCAAAATATATTCAGAGTTAAGAAGGTTGAGAGATCATATGAAGGATGAATGTTATGAATCATTCAGTGATACAAATTCTCTGACATTATACATATAG 2280 41.75 MFARFAGRPNNCGVKDEWTKVGPNPITNGKILNWLRVRLRASFGIQAELMNLYLLPLQHRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLVFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSSPETFGGLQAHALAIKTSKFYDVFVGSSLINMYCKIGYLLDARKVFDTIPERNTVSWATMISGYAMERMAFEAWELFLLMRREEGAHDKFIYTGVLSALTVPDLVHYGKQIHCLALKNGLLSIASVGNALVTMYGKCGCLDDALKTFELSGDKDDITWSAMITGYAQAGDPHEALKLFYNMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYECQIYFMTALVDMYAKCGSLVDARKGFDYLKEPDIVLWTSMISGYAQNGENETALTLYCRMQMERILPHELTMASVLRACSSLAALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLEDGNLVFRRMPSRDIMTWNAMISGLSQNGEGLKALEFFEELRHGTAKPDYVTFVNVLSACSHMGLVERGKVYFRMMLDEFGIVPRVEHYACMVDILSRAGKLHETKEFIESATVDHGMCLWRILLGACRNYRNYELGAYAGEKLMELGSQESSAYILLSSIYTALGRSDDVERVRKLMKLRGVNKEPGCSWIELKSQVHVFVVGDQIHPQIVKIYSELRRLRDHMKDECYESFSDTNSLTLYI* 760
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13987734 13990013 - Chy3G060330.1 Chy03g01053 223214

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01053 759 Gene3D Tetratricopeptide repeat domain 508 730 IPR011990 GO:0005515
Chy03g01053 759 Gene3D Tetratricopeptide repeat domain 45 180 IPR011990 GO:0005515
Chy03g01053 759 Gene3D Tetratricopeptide repeat domain 276 382 IPR011990 GO:0005515
Chy03g01053 759 Gene3D Tetratricopeptide repeat domain 383 490 IPR011990 GO:0005515
Chy03g01053 759 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 227 257 IPR002885 -
Chy03g01053 759 Pfam PPR repeat 302 322 IPR002885 -
Chy03g01053 759 Pfam PPR repeat 201 226 IPR002885 -
Chy03g01053 759 Pfam PPR repeat 229 257 IPR002885 -
Chy03g01053 759 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 249 744 - -
Chy03g01053 759 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 147 453 - -
Chy03g01053 759 Gene3D Tetratricopeptide repeat domain 181 275 IPR011990 GO:0005515
Chy03g01053 759 Pfam E motif 647 709 IPR046848 -
Chy03g01053 759 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 429 463 IPR002885 -
Chy03g01053 759 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 61 257 - -
Chy03g01053 759 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 249 744 - -
Chy03g01053 759 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 124 160 IPR002885 -
Chy03g01053 759 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 530 564 IPR002885 -
Chy03g01053 759 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 328 362 IPR002885 -
Chy03g01053 759 TIGRFAM PPR: pentatricopeptide repeat domain 533 558 IPR002885 -
Chy03g01053 759 TIGRFAM PPR: pentatricopeptide repeat domain 229 257 IPR002885 -
Chy03g01053 759 TIGRFAM PPR: pentatricopeptide repeat domain 431 463 IPR002885 -
Chy03g01053 759 TIGRFAM PPR: pentatricopeptide repeat domain 330 363 IPR002885 -
Chy03g01053 759 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 61 257 - -
Chy03g01053 759 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 147 453 - -
Chy03g01053 759 Pfam PPR repeat family 428 476 IPR002885 -
Chy03g01053 759 Pfam PPR repeat family 530 577 IPR002885 -
Chy03g01053 759 Pfam PPR repeat family 328 374 IPR002885 -
Chy03g01053 759 Pfam PPR repeat family 123 171 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01053 - - - csv:101213039 1400.19
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01053 Chy-Chr3:13987734 Chy01g01578 Chy-Chr1:21734263 4.60E-93 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g143 . . . . . . . . . . . . . . . . . Bhi04g00088 . . . . . . Cla08g01390 . . . . . . . . . . . . . Cme03g01545 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01280 . Chy03g01053 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012001 0 2 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 0 2 1 1 0 0 1 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01053 Chy_Chr03 FPKM 13.860387 15.615147 13.424956 13.276491 23.332455 22.912132 23.505638 4.269194 4.00843 4.122814