Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01058 ATGGGTTTTGAAATGTTGAAGATCGTTGCACTCTTCCTTAACATATTAGTACTACCGGTAGTGGCTGCAGAGGCGGTAAACTTGAAGGTGGGTGTGGTTTTGGATTTGAATGATGTTGTTGGGAAGATGGGTTTGAGTTGCATTAAGATGGCGCTCTCTGATTTTTATGCCAATCGGAGTTATTATAAGACCAGACTGATTCTCAATCCCAAGGACTCCAATGGAACTATTGTTGGTGCAGCTACAGCAGCCATGGAACTAATACAGGATAGCAAGGTAGAAGCCATATTGGGACCAGAAAGTTCATCACAAGCATACTTCATTGTGCAGCTTGGTGACAAAGCTGAGGTCCCTATAATTTCATTTGCACCAACAATCTCCACTCTCTCTTATCTCAAATCTCCATACTTTTTCCGAGTCGCCCAAAATCGCTCCTCCCAGGTTTACGCCATTAGTGACATCCTTAAAACTTTCGGGTGGAGGGAAATTGTTGCCATCTACGAAGACAATGAGTTTGGAAAATGGATCGTTGCAGATCTCATTGACGCTTTGCAGGTAGGTGCAAATAAGAGAAAGGAACATGACATAAAGGGTCGTGTTCACCGGAGTATCATCGACACTACAGCATCTAGTAATCAGATCAAAGAAGAGCTTAAGAGATTGGGGATGATGCAGACTCGAGTTTTTGTAGTCCACATGGAGCAGAGTTTGGGAACTCGAGTTTTTGGCATAGCCAACGAGCTGGGAATGATGAGCGAAGGATATGTGTGGATTCTCACTGATGCCACAGCTAATATGTTAAACACATTCAATACTTCAACTCTGAGTTCAATGCAGGGAGTTTTAGGAGTAAAGACGTACATCCCCAAGACAGAGACGCTGAACAACTTCACCAGTCGATGGAGAAGGAAATTTCGACAAGAGAATCCAAGCATTGATGACCCACAAGTAAATGTTTATGGATTGTGGGCTTACGATGCGGCTTGGGCATTGGCCATGGCGGTTGAGAGAATTGAAAGAGCCACTCCAAACTCTACTCAAAATGGCAAGAGAATAAGCCAGTCATTGTTAAAGACGAAATTCAATGGACTTAGTGGGAAGTTTAGTCTAGTTAAAGGTCAACTAGAGTTCCAAAATTTGGAGATAGTTAATGTAATGGGAGAAGGATCAGGAGAAAGGACAGTGGGATATTGGACTCCTAAAACGGGTTTGTTTAGAATGAAAGGGAAAGGGCATTTAAGATCAATAATTTGGCCAGGAGATTCCGTTAGAGTTCCAAAGGGATGGGGAAGGCCTTTACATAATAATGGAGAGAATAAATTGAGGATTGGAGTTGGATTGAATGTTGGATTTAGTGAATTTGGTCGAGTCATAAACAATGGGTCTGTTGTTGGATTCTGCATAGATGTCTTTGAAGCCGTTGTTGCTGAGCTCCCTTATGCTCTCTCATATTCCCTTATTCCCTTCAACCACACATATGACGACTTGATCATGCAATTGCATCAAGGGAAATTTGATGCTGCAATTGGAGATATAACAATATTAGCAAATAGATCTTCGCTGGTAGACTTTACTGTGCCATTCACCGAAGCTGGAATTTCTTTGGTGGTTCCTGTAAGACGTGACATGGGTTTGGAGAACCGTTCGATGTTCTTCGTCAAGCCCTTGAGTTGGGACCTCTGGCTCGCAATCTTTGGGTTTTTCCTTTTTATGAGTACCGTCGTTTGGATTCTGGAACACCGAGACAACGAACACTTTCATGGTTCTGCATCAAAACAGTTCTACACCAGTATTTGGATCTCCTTCCGCATCACCTTTTTTGCACAAGTGGAGACATTGAAGAGCAGTCAAGCAAAGACGGTGGTAGCGATATGGTTACTTGTGGCGTTCGTCCTAATTCAAAGCTATACAGCGAATTTAGCGTCGTGGTTCACAGTGCAACAGCTTCAACCAATCACTGATATAAATCAGATAATAAAAAACGGATGGAATGTTGGTTATCAAAATGGCTCATATGTTTTCCACAGATTGGAATTTTTGGGCATTAAGAATGTGGTACCCTATGCTTCATTAGAGCAACTACATGAACTCTTTCAAAAAGGAAGCCGCAATGGCGGCATCGATGCTGCCATTGATGAAATTCCTTACGTGAAGCTTCTTCTTTCAACGTATCCCGATAACTACACCATGGGTAATTATCAATACAATAGCGGCGGATTCGGATTTGCGTTCCAAACAGGCTCATCTCTAATAGACGACATGTCAAAAGCAGTTCTGCATGTGACTCAAAGTGATAAAATTATGAGGCAAATACAAGAGAAGTGGTTTGGAAAGAAATTGAGTCACCAACGGTGTTGTGGCAGCTCCGAGGGATCTCTTTACAGCCTCGATCTTAGTTACTTTTGGACGTTATTCCTCATGGCTTGTTCTACAGCTTTGTCGTCTATCATTACATACATAATATGTTTCTTCAACGAAAACAGACAGTTGCTCTTTGATGAGCTCAGATTCTACAGCTTATGGGAAAGAATCATTGCCACCATCCGTATTTTCTCAAGAACCAGATAG 2568 42.1 MGFEMLKIVALFLNILVLPVVAAEAVNLKVGVVLDLNDVVGKMGLSCIKMALSDFYANRSYYKTRLILNPKDSNGTIVGAATAAMELIQDSKVEAILGPESSSQAYFIVQLGDKAEVPIISFAPTISTLSYLKSPYFFRVAQNRSSQVYAISDILKTFGWREIVAIYEDNEFGKWIVADLIDALQVGANKRKEHDIKGRVHRSIIDTTASSNQIKEELKRLGMMQTRVFVVHMEQSLGTRVFGIANELGMMSEGYVWILTDATANMLNTFNTSTLSSMQGVLGVKTYIPKTETLNNFTSRWRRKFRQENPSIDDPQVNVYGLWAYDAAWALAMAVERIERATPNSTQNGKRISQSLLKTKFNGLSGKFSLVKGQLEFQNLEIVNVMGEGSGERTVGYWTPKTGLFRMKGKGHLRSIIWPGDSVRVPKGWGRPLHNNGENKLRIGVGLNVGFSEFGRVINNGSVVGFCIDVFEAVVAELPYALSYSLIPFNHTYDDLIMQLHQGKFDAAIGDITILANRSSLVDFTVPFTEAGISLVVPVRRDMGLENRSMFFVKPLSWDLWLAIFGFFLFMSTVVWILEHRDNEHFHGSASKQFYTSIWISFRITFFAQVETLKSSQAKTVVAIWLLVAFVLIQSYTANLASWFTVQQLQPITDINQIIKNGWNVGYQNGSYVFHRLEFLGIKNVVPYASLEQLHELFQKGSRNGGIDAAIDEIPYVKLLLSTYPDNYTMGNYQYNSGGFGFAFQTGSSLIDDMSKAVLHVTQSDKIMRQIQEKWFGKKLSHQRCCGSSEGSLYSLDLSYFWTLFLMACSTALSSIITYIICFFNENRQLLFDELRFYSLWERIIATIRIFSRTR* 856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14038755 14044220 - Chy3G060380.1 Chy03g01058 223219

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01058 855 Gene3D - 435 548 - -
Chy03g01058 855 SUPERFAMILY Periplasmic binding protein-like I 27 429 IPR028082 -
Chy03g01058 855 Gene3D - 549 676 - -
Chy03g01058 855 PANTHER GLUTAMATE RECEPTOR 2.9 28 844 - -
Chy03g01058 855 CDD GluR_Plant 439 776 - -
Chy03g01058 855 SMART AABind_6 440 779 IPR001638 -
Chy03g01058 855 PIRSF IGluLR_plant 2 854 IPR017103 -
Chy03g01058 855 SMART GluR_14 440 778 IPR001320 GO:0015276|GO:0016020
Chy03g01058 855 Pfam Bacterial extracellular solute-binding proteins, family 3 453 778 IPR001638 -
Chy03g01058 855 SUPERFAMILY Periplasmic binding protein-like II 417 779 - -
Chy03g01058 855 Gene3D - 48 377 - -
Chy03g01058 855 CDD PBP1_GABAb_receptor_plant 29 406 IPR044440 -
Chy03g01058 855 Gene3D - 143 404 - -
Chy03g01058 855 Pfam Ligand-gated ion channel 779 809 IPR001320 GO:0015276|GO:0016020
Chy03g01058 855 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 28 844 - -
Chy03g01058 855 Gene3D - 677 783 - -
Chy03g01058 855 Pfam Receptor family ligand binding region 47 385 IPR001828 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01058 K05387 GRIP; glutamate receptor, ionotropic, plant - csv:101205977 782.326
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01058 Chy-Chr3:14038755 Chy03g01416 Chy-Chr3:16893362 0 dispersed
Chy03g01058 Chy-Chr3:14038755 Chy03g01060 Chy-Chr3:14050081 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g641 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1638 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01275 . Chy03g01058 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000144 7 5 8 3 3 6 2 4 6 9 4 4 7 6 7 9 4 15 6 5 12 6 5 10 9 7 3 6 6 18 202
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01058 Chy_Chr03 FPKM 1.791457 1.891881 1.775598 3.38137 2.548987 2.643258 2.301268 3.418528 3.765991 4.775918