Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01060 ATGAGTTTGAGTTGCATTTCAATGGCTCTTGCTGATTTCTATGCTTCTCGGAGTTATTATAAGACCAGAATCATCCTTAATCCCATTGATTCCAATGGCTCTGTTATTCGTGCAGCTGCTGCAGCTTTGGATTTGATAAAGAAAGTGGAAGTGCAAGCGATCATAGGGCCAACAAGTTCAATGCAAGCCAGCTTCATGATCGACATTGGAGACAAAGCCGAAGTTCCCATCATCTCATTTTCAGCCACACGACCTACCCTCACTTCTCACCGCAGCTCTTTCTTCTTTCGAGCCGCTCAAAACGATTCGTCTCAAGTCAAAGCCATTGGAGCCATCATCAAGACCTTCAAATGGCGACAAGTCGTCCCCATCTATAGTGACAATGAGTTCGGCGATGGTATCATCCCTGACTTAATCAACGCTCTACAAGAAGTCGACACCGACGTGCCATACCAAAGCAAAATTTCCCCCACCGCAACCGACGAGCAAATCGGCCACGAACTTTACAAGTTAATGACAATGCAAACGAGAGTATTCGTAGTACACATGCTAGCTCGTCATGCTTCTCGACTTTTCGCAAAGGCAAAAGAGATTGGAATGATGAAAGAAGGGTACGTTTGGATAATCACAGATGCTATAGGAAATACATTGGATTTAATAGAGCCTTCAGTATTGGAGTCCATGCAAGGAGTTTTAGGAATAAGAACTCACGTCCCCAAAACCAAAAGGCTTGAGGATTTTAAACTTGAATGGCGTAAGAGATTTCGAAGATATTATCCAACAATAGAAGATATTCCTGATTTGAACGTGTTTGGGTTATGGGCTTACGATGCAGCTTGGGCATTAGCCAAAGCAGTGGAGAAGGCTGGAACACATAACCTCAAATACAAGCCAGCCACAAACATATCAGCCATGGAAATGAACTCATCAAACTATTTATACAGTCTAGGAGTGAATGAAAATGGTGTAAAATTGAGAGATGCATTATCAAAGGTGAGTTTCAAAGGGTTAGCTGGTATGTTCAATTTGATAGATGGGGAATTGGAATCATCTGTTTTTGAGATAGTGAATTTGGTGGATAATGGAAGAAGAAATGTTGGGTTTTGGTCAGCAGAAAGTGGGTTGAGAAGGAAATTAAAAGATCATCGGGACGGTTCAAGATCAAGATCATCAACAAGTGGATTAAGGACCATAATTTGGCCAGGAGAAGCAGATTTTACTCCAAAAGGATGGGAAGTTCCAACGAATAGAAAAAAATTGAGAGTTGGAGTTCCAATAAAGAGTGGATTTCTTGAGTTCGTGAAAGTGGGGTTTGATCCTAAAACAAATGAAACGAAAGTGAGTGGTTATTGTATCGATGTGTTTAAGGCTGTGGTTGAAGCTTTGCATTTTGATGTTGCTTATGAATTCATTCCAGTTAGCATTGCCAATTCAGATATAGGAGCCAGCTATAATGACTTGGCTTATCGACTCTTCCTTGGGGAGTTTGATGCTGTGGTAGCCGACTTAACGATCCGCGCAAATAGGTCGTTATACATAGACTACACATTACCATTTACAGAATCTGGTGTGTCAATGGTTGTGCCAATGAAGAGCACGAAGAATAAAAATGCATGGGAATTCATAAGACCTCTAACAGGTCAAATGTGGGCTCTAACTGGCGGTTTCTTCCTTGTCATCGCACTTGTTGTTTGGATTCTTGAACATCGAATCAATGAAGAGTTTTTTGATGGAAGTGCTTTGGATCAGATCTGTACTAGTCTTTGGTACTCTTTCTCCACCATGGTTTTTGCCCATAGAGATGTTACATTCAACAACTGGACAAGAGTTGTGGTGATAATATGGCTGTTTGTAGTTCTAGTCATTACACAAAGTTACACTGCAAGTTTAGCTTCACTTTTGACGGTTCAAGAGCTCAAACCAGCCGTAACTGATATCAATCAGCTTCTTAAAAATGGAGAGAACATCGGTTTTCAAGGGGGTTCTTTCGTCTATGAGATTCTTAAGTCCTTGAAGTTCAATGATTTCCAGCTCAAAACTTACGAAAGTGTAGAACAAATGCACGAACTTTTCACAAAAGGAAGCATGAATGGAGGAATTTCTGCTGCCTTAGATGAAATCCCTTACATTAACCTATTTCTTGCAAAGTATTGCTCACAATATACCACCACTGAACCCACCTATAAAGCCGATGGGTTTGGTTTTGGTTTTCCAATAGGTTCGCCCTTAGTACCTGATATCTCGAGAGCAGTCTTGCAAGTGACAGAAAGTGATAGAATGAGAGAGATCGAAAACGCATGGTTTCAGAAGACGAAGGACTGTTTGGCATCGAAAGCTTCGGATCTTTCTTCTAGTCGACTCAGCCCCATCAGCTTCTGGGGACTTTTTATGATCATCAGCGTTGTTTCATTTGTTTCTTGCACCTCTTACATTGGCAAATTTCTGTACGACCAACGTTACGAGTGGTTAAATGGAAATCAGACCATCTCTAGCTTGTTTCGAATGTTTATAATGGAGAGAGACAATTGA 2529 41.04 MSLSCISMALADFYASRSYYKTRIILNPIDSNGSVIRAAAAALDLIKKVEVQAIIGPTSSMQASFMIDIGDKAEVPIISFSATRPTLTSHRSSFFFRAAQNDSSQVKAIGAIIKTFKWRQVVPIYSDNEFGDGIIPDLINALQEVDTDVPYQSKISPTATDEQIGHELYKLMTMQTRVFVVHMLARHASRLFAKAKEIGMMKEGYVWIITDAIGNTLDLIEPSVLESMQGVLGIRTHVPKTKRLEDFKLEWRKRFRRYYPTIEDIPDLNVFGLWAYDAAWALAKAVEKAGTHNLKYKPATNISAMEMNSSNYLYSLGVNENGVKLRDALSKVSFKGLAGMFNLIDGELESSVFEIVNLVDNGRRNVGFWSAESGLRRKLKDHRDGSRSRSSTSGLRTIIWPGEADFTPKGWEVPTNRKKLRVGVPIKSGFLEFVKVGFDPKTNETKVSGYCIDVFKAVVEALHFDVAYEFIPVSIANSDIGASYNDLAYRLFLGEFDAVVADLTIRANRSLYIDYTLPFTESGVSMVVPMKSTKNKNAWEFIRPLTGQMWALTGGFFLVIALVVWILEHRINEEFFDGSALDQICTSLWYSFSTMVFAHRDVTFNNWTRVVVIIWLFVVLVITQSYTASLASLLTVQELKPAVTDINQLLKNGENIGFQGGSFVYEILKSLKFNDFQLKTYESVEQMHELFTKGSMNGGISAALDEIPYINLFLAKYCSQYTTTEPTYKADGFGFGFPIGSPLVPDISRAVLQVTESDRMREIENAWFQKTKDCLASKASDLSSSRLSPISFWGLFMIISVVSFVSCTSYIGKFLYDQRYEWLNGNQTISSLFRMFIMERDN* 843
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14050081 14054816 + Chy3G060400.1 Chy03g01060 223221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01060 842 SMART GluR_14 419 770 IPR001320 GO:0015276|GO:0016020
Chy03g01060 842 PANTHER GLUTAMATE RECEPTOR 2.9 2 828 - -
Chy03g01060 842 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 2 828 - -
Chy03g01060 842 PIRSF IGluLR_plant 1 841 IPR017103 -
Chy03g01060 842 SUPERFAMILY Periplasmic binding protein-like II 395 769 - -
Chy03g01060 842 Gene3D - 419 538 - -
Chy03g01060 842 SUPERFAMILY Periplasmic binding protein-like I 6 402 IPR028082 -
Chy03g01060 842 Gene3D - 299 418 - -
Chy03g01060 842 Pfam Ligand-gated ion channel 770 801 IPR001320 GO:0015276|GO:0016020
Chy03g01060 842 Pfam Receptor family ligand binding region 5 360 IPR001828 -
Chy03g01060 842 Gene3D - 714 775 - -
Chy03g01060 842 Pfam Bacterial extracellular solute-binding proteins, family 3 441 769 IPR001638 -
Chy03g01060 842 CDD PBP1_GABAb_receptor_plant 1 379 IPR044440 -
Chy03g01060 842 CDD GluR_Plant 418 768 - -
Chy03g01060 842 Gene3D - 539 673 - -
Chy03g01060 842 Gene3D - 103 270 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01060 Chy-Chr3:14050081 Chy03g01064 Chy-Chr3:14069020 0 dispersed
Chy03g01063 Chy-Chr3:14066302 Chy03g01060 Chy-Chr3:14050081 6.52E-143 dispersed
Chy03g01058 Chy-Chr3:14038755 Chy03g01060 Chy-Chr3:14050081 0 proximal
Chy03g01060 Chy-Chr3:14050081 Chy03g01061 Chy-Chr3:14057876 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01060 K05387 - csv:101203305 1586.24