Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01061 ATGTCCGTGGCGGCCCAGGAGGAGGAGGAGGAGGCGGCCACTGCCGTGGTAGTGAAAGTGAAGGTGGGTGTGGTTTTGAATTTGAATTTTTCTTTTGGGAAGATGGGTTTGTGCTGTATTTCAATGGCTCTTGCTGATTTCTATTCTTCTCGGAGTCGTTACAAAACAAGAGTGATTCTCAACACAATTGATTCCAATGACACAGTTGTTGGTGCAGCTGCAGCAGCGTTGGATTTGATAAAGAAAGAGGAAGTACAAAGCATTATAGGTCCAACAAGTTCGATGCAAGCGAGTTTCATGATCGATGTTGGAGACAAAGCACAAGTTCCCATAATCTCATTTTCCGCCACACGACCTTCCCTCACATCCCATCGCAGCTCTTACTTCTTCCGAATCGCCCAAGCAGATTCCTCTCAAGTGAAAGCCATTGCAGCCATTGTCAAGGCCTTCAAATGGAGGAAAGTTGTCCCAATCTACGTTGACAACGAGTTCGGCGACGGTATCATACCTTTCCTTGTCGACGCTTTACAAGAGGTAGATGCGAATGTGCCATACCAAAGCGTCATCTCTCCTACCGCCACCAACGACGAGATTGAACTCAAACTTTCAAATTTAATGAATATGCAAACTCGAGTGTTTGTGGTGCACATGTTACCTACCCTTGCTTCAAGACTCTTCACTGTGGCAAAAGAGAAGGGAATGATGGGTCATGGCTACGCTTGGATAGTAACAGATGCTATCACAAACGAGTTTAATTCGATGGAACCCTCAATTCTTGATCAATCAATGCAAGGAGTTTTGGGAATAAGAACTTATGTCCCAGGAATCAAACGCCTTGAATCCTTCAAACGTGCTTGGCAAAAGAGATTTCTAAGGTACTATCCAACCATAGAAGAAATTCCTGAGCTCAATGTGTTTGGTTTATGGGCTTATGACGCTGCTTGGGCCCTAGCCATCGCAGTCGAGAAGGCAGGAACTGACAATCTTCGATATAGCAAGCCCAATAATGTTACTACCAGCACCATGAAAACGAACCATTCATCAAACTATCTCTACAACCTCGGCATCAATGAAAACGGTCCCAAGTTGCGAGACGCATTGTCAAATGTTAGGTTTAGGGGGTTAGCTGGTGAGTTCAGTCTCGTCAATGGCCAATTACAATCGTTCGTTTTCGAGATAGTGAACGTGGTCGGTAACGAAAGAAGGAGCGTGGGGTTTTGGAGGCCGAAAGCTGGGCTGACAACAAGTCTACGGCACTCAGGGAGAAAAAGGGAGTTGAGACCGATCATATGGCCGGGAGATACCGACGAGGCGCCAAAAGGGTGGGAGATTCCAACGGGTGAGAAGAAGTTGAGAGTTGGGGTTCCAGTGAAGGATGGATTTTTAGAGTTTGTGAATGTGGTTCGTGATCCAAAAACAAATGCAACGGAAGTGAGTGGTTATTGTATAGATGTTTTTAAGGCTGTGATTGAAGCTTTGCCTTATGCTGTTGCTTATGAGTTCATTCCTAACGACAAATCTAATGCACATCCTGGTGGTAGTTACAATGAATTGACTCATCAGCTCTCCCTTGGGAAGTTTGATGCTGTGGTGGGTGACATAACGATCCGAGCCAATAGGTCTGAGTACATAGACTATACATTGCCATTCACAGAATCTGGCGTAGCCATGGTCGTGCCGATGAAGAGCAGCAAGAACACTAGCTTGTGGGCTTTCTTAAAGCCTCTTACTTGGAAGTTATGGGTCGTTATAGGCAGCTCCTTTTTGCTCATGGCAGTTATTGTTTGGACACTCGAACATCGAGTCAACGAGGAATTCAATGGAAGTGCTGTTGATCAGATTTGTAACAGTCTTTGGTACTCTTTTTCCACCATGGTTTTCGCCCATCGAGAGCCTACATACAACCACTGCACCAAATTTGTGGTAATAATATGGCTGTTTGTGGTTCTTATCATTACACAAAGTTACACTGCAAGTTTGGCTTCACTTTTGACGGTCCAAGAGCTCAAACCAACTGTAACTGATATCAATCAGCTTCTTAAAAATGGAGAGAACGTTGGGTATCAAGGAGGTTCTTTCGTGTACGAGATTCTCAAGTCGTTGAAGTTCCATGATTCCCAACTCAAAACTTATCAATCTCCAGAACAAATGCATGAACTTTTTCTCAAAGGAAGCATCAACGGCGGAATTTCTGCTGCTGTGGATGAAAACCCTTATATTAAGTTGTTTCTTGCCAAATATTGCTCCCAATATACCACCACCGAACCCACTTACAAAGCCGATGGATTTGGTTTTGTAAAAACAGAATCTGAGTTGTCTACCAAAACTTCAAAAAAATCAGTAAATTTGGAAAATCTGGATTGGGAGGGTTTTCCGAGAGGCTCGCCGTTAGTACCTGACATTTCGAGAGCGATTTTGAAGGTAACAGAGGGTGATAGAATAAGAGAGATCGAAAACGCATGGTTCAAGAAGGTGAGAGAATGCTCGAGTTCAGAAGCCGCTGAATTGTCTTCCTCCCGCCTCAGTATCGACAGTTTTGGGGGACTTTTTGCCATAACCGCCGTTGCTTCCCTACTTTTTGTGGACGGTTACGTTATCTACTTTCTCTGCATAGAACTGCCGAATTCTTGGAGGCCAGATCGTTCCTTGCGGGAAATAATAGCCGAGTTGTTTTCCAGGTTCATGGCTACAGATGACGCAGCTATAGATCTTCGAAGAAGAAGACGTCAACGCCGAAATTGA 2742 44.46 MSVAAQEEEEEAATAVVVKVKVGVVLNLNFSFGKMGLCCISMALADFYSSRSRYKTRVILNTIDSNDTVVGAAAAALDLIKKEEVQSIIGPTSSMQASFMIDVGDKAQVPIISFSATRPSLTSHRSSYFFRIAQADSSQVKAIAAIVKAFKWRKVVPIYVDNEFGDGIIPFLVDALQEVDANVPYQSVISPTATNDEIELKLSNLMNMQTRVFVVHMLPTLASRLFTVAKEKGMMGHGYAWIVTDAITNEFNSMEPSILDQSMQGVLGIRTYVPGIKRLESFKRAWQKRFLRYYPTIEEIPELNVFGLWAYDAAWALAIAVEKAGTDNLRYSKPNNVTTSTMKTNHSSNYLYNLGINENGPKLRDALSNVRFRGLAGEFSLVNGQLQSFVFEIVNVVGNERRSVGFWRPKAGLTTSLRHSGRKRELRPIIWPGDTDEAPKGWEIPTGEKKLRVGVPVKDGFLEFVNVVRDPKTNATEVSGYCIDVFKAVIEALPYAVAYEFIPNDKSNAHPGGSYNELTHQLSLGKFDAVVGDITIRANRSEYIDYTLPFTESGVAMVVPMKSSKNTSLWAFLKPLTWKLWVVIGSSFLLMAVIVWTLEHRVNEEFNGSAVDQICNSLWYSFSTMVFAHREPTYNHCTKFVVIIWLFVVLIITQSYTASLASLLTVQELKPTVTDINQLLKNGENVGYQGGSFVYEILKSLKFHDSQLKTYQSPEQMHELFLKGSINGGISAAVDENPYIKLFLAKYCSQYTTTEPTYKADGFGFVKTESELSTKTSKKSVNLENLDWEGFPRGSPLVPDISRAILKVTEGDRIREIENAWFKKVRECSSSEAAELSSSRLSIDSFGGLFAITAVASLLFVDGYVIYFLCIELPNSWRPDRSLREIIAELFSRFMATDDAAIDLRRRRRQRRN* 914
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14057876 14061875 + Chy3G060410.1 Chy03g01061 223222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01061 913 Pfam Ligand-gated ion channel 824 856 IPR001320 GO:0015276|GO:0016020
Chy03g01061 913 PIRSF IGluLR_plant 790 910 IPR017103 -
Chy03g01061 913 PIRSF IGluLR_plant 1 787 IPR017103 -
Chy03g01061 913 CDD PBP1_GABAb_receptor_plant 26 417 IPR044440 -
Chy03g01061 913 CDD GluR_Plant 449 822 - -
Chy03g01061 913 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 20 871 - -
Chy03g01061 913 PANTHER GLUTAMATE RECEPTOR 2.9 20 871 - -
Chy03g01061 913 Gene3D - 137 305 - -
Chy03g01061 913 Pfam Bacterial extracellular solute-binding proteins, family 3 475 823 IPR001638 -
Chy03g01061 913 Gene3D - 451 569 - -
Chy03g01061 913 Gene3D - 570 710 - -
Chy03g01061 913 Pfam Receptor family ligand binding region 40 398 IPR001828 -
Chy03g01061 913 Gene3D - 354 450 - -
Chy03g01061 913 SUPERFAMILY Periplasmic binding protein-like I 20 433 IPR028082 -
Chy03g01061 913 SUPERFAMILY Periplasmic binding protein-like II 429 823 - -
Chy03g01061 913 SMART GluR_14 450 824 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02185 Chy-Chr2:26034961 Chy03g01061 Chy-Chr3:14057876 0 dispersed
Chy03g01061 Chy-Chr3:14057876 Chy03g01064 Chy-Chr3:14069020 0 dispersed
Chy03g01416 Chy-Chr3:16893362 Chy03g01061 Chy-Chr3:14057876 0 dispersed
Chy03g01060 Chy-Chr3:14050081 Chy03g01061 Chy-Chr3:14057876 0 tandem
Chy03g01061 Chy-Chr3:14057876 Chy03g01062 Chy-Chr3:14063338 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01061 K05387 - csv:101203550 1528.46