Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01062 ATGAAAGTATCTTTCCCGTCCATTATTAGACAACATGAGTTTCATCAGAACCAATTTGATAATGAACTCGATAAGTGTGTCAATTTTTCTGTTTTTACCAGTTATTATCCAAGAAGGAAGGAAGAAGACATTCCAGAGGTAGACGTGTTTGGGTTATGGGCTTATGACGCAGCTTCGGCGCTTGCCATAGCTGTGGAAAAAGCCGGGACCGACAATCTTCGGTACTCCTCAACCAACATTACCGCGTCAAAAATGAACTCAACTAACTATCTATATACCCTGGGGGTGAATCAAAATGGTCAGAAATTGCGAGATACATTCTCAAACCTCAAGTTCAGGGGGTTGGCTGGCGAGTTCAGTTTAGTTAATGGACAACTACAGTCATCTCTTTTTGAGATAGTGAATGTAAATGGGAATGGTAGACGAAACGTTGGGTTTTGGTCGGCAGAAAGTGGTCTGAGGAGGAAGGTGGAAGAGTCGGAAAGATCGGCGAAGGGGTTGAGATCGATCATATGGCCAGGAGAGCGTATTGTTACACCAAAAGGATGGGAAATTCCAACGAACGGGAAGAAGTTGAGAATTGGAGTTCCGGTGAAGGATGGATTTGAGGAGTTTGTGCGTGTGACTCGTGATCCTAAAACGAATGCAACAATTGATGTAGGAGGATATTGCATTGATGTGTTTAAGGCTGTGATTGAAACCTTGCCTTATATGGTTGATTATGAGTTTGTTCCTGCCAACCCGGATTTCACCTACAATGAATTGACTTATCAAGTCTTCCTTCGTAAATTCGATGCTGTGGTGGGCGACATAACGATCCGAGCGAACAGATCTTCATACCTAGATTACACATTGCCATTCACAGAATCAGGGGTGGCCATGGTTGTGCCAATGAAGAACAGCAAGAACACCAACGCATGGGTATTTCTAAAGCCTCTTACATTGAATTTGTGGATCATCACTGCGTTCTTCTTTGTGTTTGTGGCACTTGTTATTTGGATTCTTGAACATCGAGTCAATGAACAGTTTCGTGGAAGTGCTTTAGATCAGCTCTGTACTAGTCTTTGGTACTCCTTCTCCACCATGGTTTTTGCTCATAGGGAAGTTACATTGAACAATTTGACAAGAGTTGTGGTGATAGTATGGCTATTTGTGGTTCTCATAATTACACAAAGTTACACTGCAAGTTTGGCCTCACTTTTGACGGTTCAAGATCTGGAGCCAACTGTTACTGATATCAATCAACTTCTTAAAAATGGAGACAACATTGGATATCAATATGGTTCATTCGTGCACGAGATTCTTAAGTCGTTGAAGTTCCATGATTCTCAGCTCAAACCTTACAACTCCCCAAAAGAAATGCACCAACTTTTCACTAAAGGAAGCATCAATGGAGGAATTTCTGCTGCTGTTGATGAAATACCTTATATTAAGTCGTTTCTTGCCATGTATTGCTCTCAATACACCACCACCGAACCCACCTATAAAGCCGATGGCTTTGGCTTTGGATTTCCAATAGGTTCGCCTTTAGTTCCTCATGTCTCAAGAAGAATCTTGGAGGTGACAGAAAGCGAGACAATGAAAAATATTGAAGAGAAATGGTTCAAAACGTTAAAAGAATGTACGGCTTCAAAAGTGGCAGAGTTGTCTTCCACTCGCTTGAGCATCAACAGCTTCTGGGCGCTTTTCCTTATCACTGGAGTTGCTTCCATATGTTCTGTGGCTTTTTACGTCGGCAAATTTCTGTACGACGAACGGAGGCGGTGGCAAAACGTAGAGTCCCCAACCGGGGAAAGATTATACAAGTTGGCCAAGGAGTTCTTGAAGAGAGATCAGAGAGCTCACACGCTGAGGCGAAGGATATCCATAAATGGGGTTCCTTTTAATCCACAAGCCATTGTTGCTAGTGATGATCGCCACCCTCGAAGAGATTGA 1935 42.69 MKVSFPSIIRQHEFHQNQFDNELDKCVNFSVFTSYYPRRKEEDIPEVDVFGLWAYDAASALAIAVEKAGTDNLRYSSTNITASKMNSTNYLYTLGVNQNGQKLRDTFSNLKFRGLAGEFSLVNGQLQSSLFEIVNVNGNGRRNVGFWSAESGLRRKVEESERSAKGLRSIIWPGERIVTPKGWEIPTNGKKLRIGVPVKDGFEEFVRVTRDPKTNATIDVGGYCIDVFKAVIETLPYMVDYEFVPANPDFTYNELTYQVFLRKFDAVVGDITIRANRSSYLDYTLPFTESGVAMVVPMKNSKNTNAWVFLKPLTLNLWIITAFFFVFVALVIWILEHRVNEQFRGSALDQLCTSLWYSFSTMVFAHREVTLNNLTRVVVIVWLFVVLIITQSYTASLASLLTVQDLEPTVTDINQLLKNGDNIGYQYGSFVHEILKSLKFHDSQLKPYNSPKEMHQLFTKGSINGGISAAVDEIPYIKSFLAMYCSQYTTTEPTYKADGFGFGFPIGSPLVPHVSRRILEVTESETMKNIEEKWFKTLKECTASKVAELSSTRLSINSFWALFLITGVASICSVAFYVGKFLYDERRRWQNVESPTGERLYKLAKEFLKRDQRAHTLRRRISINGVPFNPQAIVASDDRHPRRD* 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14063338 14066286 - Chy3G060420.1 Chy03g01062 223223

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01062 644 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 43 613 - -
Chy03g01062 644 Pfam Ligand-gated ion channel 537 569 IPR001320 GO:0015276|GO:0016020
Chy03g01062 644 SUPERFAMILY Periplasmic binding protein-like II 168 536 - -
Chy03g01062 644 SUPERFAMILY Voltage-gated potassium channels 313 401 - -
Chy03g01062 644 PANTHER GLUTAMATE RECEPTOR 2.9 43 613 - -
Chy03g01062 644 CDD GluR_Plant 190 535 - -
Chy03g01062 644 Pfam Bacterial extracellular solute-binding proteins, family 3 221 536 IPR001638 -
Chy03g01062 644 Pfam Receptor family ligand binding region 41 139 IPR001828 -
Chy03g01062 644 Gene3D - 78 190 - -
Chy03g01062 644 SUPERFAMILY Periplasmic binding protein-like I 47 184 IPR028082 -
Chy03g01062 644 Gene3D - 307 444 - -
Chy03g01062 644 Gene3D - 191 306 - -
Chy03g01062 644 Gene3D - 481 543 - -
Chy03g01062 644 SMART GluR_14 191 537 IPR001320 GO:0015276|GO:0016020
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01062 K05387 GRIP; glutamate receptor, ionotropic, plant - csv:101203794 1180.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01062 Chy-Chr3:14063338 Chy03g01064 Chy-Chr3:14069020 0 dispersed
Chy03g01061 Chy-Chr3:14057876 Chy03g01062 Chy-Chr3:14063338 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g634 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda01g01357 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01271 . Chy03g01062 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000144 7 5 8 3 3 6 2 4 6 9 4 4 7 6 7 9 4 15 6 5 12 6 5 10 9 7 3 6 6 18 202
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01062 Chy_Chr03 FPKM 2.791186 3.544969 3.211308 3.07023 5.050049 5.526962 4.838902 7.534814 7.406074 7.544096