Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01064 ATGAGGAGACGAAAGGGTATGAAAAGTGGTTATTGGGTGTTGTTGATGATGCTCTTGTTGGCAACGGCGATGGTGGCAGCGAAGGAGAAGGAGGAGGAGGAGAAGGCGGCAGGGGCAGTGAAAGTGAAGGTGGGTGTAGTTTTGGATTCGGATGATTATGGGAAGGTGGATTTGAGTTGCATCTCAATGGCTCTCTCAGATTTTTATGCTTCTCGGAGTCATTTTAAGACAAGAGTGGTTCTTAAGCCCATGGACTCCAATGCTACCGTTGTTGATGCAGCTGCTGCAGCTTTAGAATTGATAAAGAAAGAGGAAGTGCAGGCCATTATAGGTCCAACAAGCTCAATGCAAGCCAACTTCATGATCGACATTGGAGACAAAGCACATGTTCCCATCATCTCATTTTCAGCCACACGACCTTCTCTCACTTCTCACCGCAGCCCTTACTTCTTTCGAGTTGCCCAAGATGATTCCTCTCAAGTTAAAGCCATCGGAGCCATCGTCAAAACCTTCAAATGGCGAAACGTCGTCCCCATCTATGTCGACAACGAGTTCGGCGATGGCATCATCCCTTATCTCATCGACGCGCTCCAAGAAGTCAATGCTCACGTACCTTATCAAAGCATCATTTCCCCGGATGTAACCGACGATCATCTCACCAGTGAACTTTACAAATTAATGTCAATGCAGACGCGAGTGTTTGTGGTGCACATGTTACCTGACCTTGCCTCTCGTATTTTCACGAAAGCAAAACAAATCGGAATGATGAAAAAAGGGTATGTTTGGATGATAACGGATGGTGTTACAAATATGTTGGAGTCAATAAAGCCTTCAACTTTTGAGTCAATGCAAGGAGTTATTGGAATAAAAACTCACGTCCCTAGAACTGAAAAGCTTGAATCTTTTGAACGTGATTGGAGAAAGAGATTTCTTAGGTATTATCCAAAAATGGAAGTCGTTCCTGCGCTAGACGTTTTTGCATTATGGGCCTATGATGCGGCTTGGGCCTTAGCCATTGCAGTGGAAAAAGCTGGGACCGACCACCTTAAGTACAGCCAAACCAATTTTACAACTTTGAACTATTTATACAACCTTGGTGTGAATCAGAACGGTGAGAAGCTGCGTGTTGCGTTTTCGAAGGTTAAATTCAAGGGTTTGGCTGGAGAATTTAGTGTGAAAAATGGGCAATTGGATTCGGAGATTTTTGAGATAGTGAATGTGATTGGGAATGGGAGAAGGAATGTGGGGTTTTGGTCGCCGGAAAGTGGGCTGAGGACGGAATTGGAAAGAGGGAGAGATGGGCTGAGAACGATCATATGGGGCGGCGGCGATTCGGGGGTTCCGCCGAAAGGATGGGAGATTCCGACGAATGAGAAGAAGCTTAGGGTGGTGGTTCCGGTAAAGGATGGATTTTGGGAGTTTGTGAGTGTGGTTCGTGATCCTGTGACCAATGAAACGAAAGTGAGTGGTTATTGTATAGATGTGTTTAAGGCTGTGATTGAAGCTTTGCCTTATGCTGTTGCTTATGAGCTTATTCCTTTCCATAAATCTGCGGCGGAGTCAGGTGGCACCTACAATGACTTGGTTGATCAAATCTATTATGGGAAGTTTGATGCTTTGGTGGGTGACTTGACAATCCGAGCAAACAGGTCAAGATATATTGACTACACATTGCCATTTGCAGAGTCAGGGGTGTCAATGGTTGTGCCAATAATGAGTACCAAGAACACCAATGCATGGGTCTTCATAAAGCCTCTAACAGGCCATCTCTGGTCACTCACTGGCGGTTTCTTCCTTGTCATGGCACTTGTTGTTTGGACTTTGGAACATCGAGTCAATGAAGAGTTTCGTGGAAGTCCATTGGATCAGGTCTTTACCAGTCTTTGGTACTCTTTCTCCACTATGGTTTTTGCCCATCGGGAGATAACATTGAACAATTGGACGAGATTTGTGATGATAGTATGGCTATTTGTGGTTTTGATAATCACACAAAGTTACACTGCTAGTTTGGCCTCATATTTGACGGTTCAGGAGTTCAAACCGGCTGTGACTGATATCAATCAACTGCGGAAAAATGGAGAAAAAATTGGGCACAAAGTTGGTTCTTTTATCCATGAGATTCTCAAGTCAATGAAGTTTGAAGATGACCAACTCAAAACTTACCGTACTACAGAAGAAATGCACGAACTTTTATCCAAAGGAAGCGCCAATGGTGGAATTTCTGCTGCCATGGATGAAAACCCTTACATCAAGTTGTTTCTCGCCAAGTACTGCTCACAATATACTACCACTGAACCCACCTTTAAAGCTGATGGCTTTGGTTTTGGTTTCCCCAAAGGTTCGCCATTAGTACCTGATATTTCAAGAGCGATCTTGGAGGTGGCGGAAAGTGACAGAATGAGAGAAATTGAGAACGCATGGTTCAAAAAGTTGCAAGAATGTTCGATATCGGATACTTCGAAGTTGTCGTCGACACGTCTGAGCATTGACAGCTTCTGGGCACTTTTTGTTATCGTAGCATGTGTGTCTGCAGTTTCTGTCATCTGTTACATCATCAAATTTCTGTACGAGCAGAAAGGCGTGTGGTCGAACGAAAATCGTTCGACGACTGGGGAAAGATTGAGGGAGTTGGGTAAAATATTCATGGATAGAGATGCAGGAGCTCACCCACTTAGAAGAAGGGTATTCATAAATGGTGCTCCTGTTCATCCACAACCTCTAGTTATTCGAGATAATGATCACCCTCGAGCACATTGA 2757 44.25 MRRRKGMKSGYWVLLMMLLLATAMVAAKEKEEEEKAAGAVKVKVGVVLDSDDYGKVDLSCISMALSDFYASRSHFKTRVVLKPMDSNATVVDAAAAALELIKKEEVQAIIGPTSSMQANFMIDIGDKAHVPIISFSATRPSLTSHRSPYFFRVAQDDSSQVKAIGAIVKTFKWRNVVPIYVDNEFGDGIIPYLIDALQEVNAHVPYQSIISPDVTDDHLTSELYKLMSMQTRVFVVHMLPDLASRIFTKAKQIGMMKKGYVWMITDGVTNMLESIKPSTFESMQGVIGIKTHVPRTEKLESFERDWRKRFLRYYPKMEVVPALDVFALWAYDAAWALAIAVEKAGTDHLKYSQTNFTTLNYLYNLGVNQNGEKLRVAFSKVKFKGLAGEFSVKNGQLDSEIFEIVNVIGNGRRNVGFWSPESGLRTELERGRDGLRTIIWGGGDSGVPPKGWEIPTNEKKLRVVVPVKDGFWEFVSVVRDPVTNETKVSGYCIDVFKAVIEALPYAVAYELIPFHKSAAESGGTYNDLVDQIYYGKFDALVGDLTIRANRSRYIDYTLPFAESGVSMVVPIMSTKNTNAWVFIKPLTGHLWSLTGGFFLVMALVVWTLEHRVNEEFRGSPLDQVFTSLWYSFSTMVFAHREITLNNWTRFVMIVWLFVVLIITQSYTASLASYLTVQEFKPAVTDINQLRKNGEKIGHKVGSFIHEILKSMKFEDDQLKTYRTTEEMHELLSKGSANGGISAAMDENPYIKLFLAKYCSQYTTTEPTFKADGFGFGFPKGSPLVPDISRAILEVAESDRMREIENAWFKKLQECSISDTSKLSSTRLSIDSFWALFVIVACVSAVSVICYIIKFLYEQKGVWSNENRSTTGERLRELGKIFMDRDAGAHPLRRRVFINGAPVHPQPLVIRDNDHPRAH* 919
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14069020 14075054 - Chy3G060440.1 Chy03g01064 223225

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01064 918 PANTHER GLUTAMATE RECEPTOR 2.9 42 884 - -
Chy03g01064 918 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 42 884 - -
Chy03g01064 918 Pfam Receptor family ligand binding region 60 409 IPR001828 -
Chy03g01064 918 Gene3D - 722 816 - -
Chy03g01064 918 Gene3D - 580 721 - -
Chy03g01064 918 Gene3D - 351 459 - -
Chy03g01064 918 Pfam Bacterial extracellular solute-binding proteins, family 3 484 809 IPR001638 -
Chy03g01064 918 SUPERFAMILY Periplasmic binding protein-like I 40 426 IPR028082 -
Chy03g01064 918 CDD PBP1_GABAb_receptor_plant 54 424 IPR044440 -
Chy03g01064 918 SMART GluR_14 460 810 IPR001320 GO:0015276|GO:0016020
Chy03g01064 918 CDD GluR_Plant 459 808 - -
Chy03g01064 918 Pfam Ligand-gated ion channel 810 841 IPR001320 GO:0015276|GO:0016020
Chy03g01064 918 SUPERFAMILY Periplasmic binding protein-like II 446 809 - -
Chy03g01064 918 PIRSF IGluLR_plant 7 903 IPR017103 -
Chy03g01064 918 Gene3D - 158 325 - -
Chy03g01064 918 Gene3D - 460 579 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01064 K05387 GRIP; glutamate receptor, ionotropic, plant - csv:101204040 1702.57
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00642 Chy-Chr3:8928882 Chy03g01064 Chy-Chr3:14069020 0 dispersed
Chy03g01060 Chy-Chr3:14050081 Chy03g01064 Chy-Chr3:14069020 0 dispersed
Chy03g01061 Chy-Chr3:14057876 Chy03g01064 Chy-Chr3:14069020 0 dispersed
Chy03g01062 Chy-Chr3:14063338 Chy03g01064 Chy-Chr3:14069020 0 dispersed
Chy03g01064 Chy-Chr3:14069020 Chy04g00638 Chy-Chr4:7285670 0 dispersed
Chy07g00041 Chy-Chr7:387960 Chy03g01064 Chy-Chr3:14069020 2.46E-140 dispersed
Chy11g00605 Chy-Chr11:7097027 Chy03g01064 Chy-Chr3:14069020 6.35E-161 dispersed
Chy03g01063 Chy-Chr3:14066302 Chy03g01064 Chy-Chr3:14069020 1.43E-130 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g631 . . . . . . . . . Cmo12g00332 . . . . . Cpe07g00336 . Bhi04g00081 Tan02g2792 . . Hepe10g0197 . Lcy13g1866 . . . . . . . . . . . . . . Cme03g01551 . . Bda01g01359 . . . . . . . . . Cma12g00380 . . . . . . . . . . . . . . . . . . . . Chy03g01064 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000144 7 5 8 3 3 6 2 4 6 9 4 4 7 6 7 9 4 15 6 5 12 6 5 10 9 7 3 6 6 18 202
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01064 Chy_Chr03 FPKM 46.399391 50.605934 42.456032 43.814011 52.846184 53.306011 53.605904 43.114555 44.319897 41.896671