Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01065 ATGGCTGGTTCTCGGGGTGGAAGACCATTTTCAACAGATTCTAATAAGATCGATGAACCGTTCAAGGTTGAGGAAGCTGAAACAGTTAATGTTCCTCCGCCTCCAAATGAGAAGCTGCTGGTGCTGGGTGGAAATGGATTTGTGGGCTCTCATATCTGTCAAGAAGCTCTAAATCGTGGTCTTACAGTTGCTAGCCTTAGTAGGTCGGGAAGATCATCAATACGTGATTCTTGGGCTAACCATGTAATTTGGCATCAAGGAAACCTTCTTTCACCTGATTCATTGAGTGAAGCTTTTGATGGCGTTACAGCTGTTATCTCTTGCATTGGTGGTTTTGGCTCTAATTCTCAAATGTACAAGATTAATGGGACGGCAAATATCAATGCAATCAGAGTTGCTTCCGATAAAGGTGTGAAGAGATTTGTCTATATCTCTGCGGCTGATTTTGGCTTGGCTAATTACTTGCTACAAGGATATTATGAGGGAAAGCGAGCAGCTGAGACAGAACTCCTCACTAAATTTCCTTATGGAGGAGTGATTTTGAGGCCGGGATTTATTTATGGGACCCGTAATGTTGGGAGCGTGAAGTTGCCTCTGGGAGTAATTGGTTCTCCTTTGGAAATGGTTCTTCAACACGCCAAACCACTACACCAGCTACCACTCGTTGGTCCCCTATTTACTCCTCCGGTAAGTGTGACATCGGTGGCGAGGGTTTCTGTTCGGGCAGCAACAGATCCTGTCTTTCCTCCCGGCATCATCGACATCTATGTTACCCTTCACACGAGCTTGATTTCGAAGAGAGGGAAAAATCTAACGGAGAAGATGAACCATAACCAACAAGCGACAGGGAGCAGGCACGACGATGACGCAGCGCTATCCGAGTTTTTAGCTTCTCTAATGGAGTATACTCCCACTATTCCCGATGAGTTGGTGGAGCATTACTTAGGAAAGAGTGGATTTCAGTGTCCCGACGTTCGATTGATCAGGCTTGTCGCTGTTGCCACACAGAAGTTCGTTGCGGATGTTGCAAGTGATGCTCTCCAGCATTGTAAGGCAAGACAGGCAGCAGTAGTGAAAGACAAAAGGGATAAACAACAAAAGGATAAGCGCTTAATATTGACCATGGATGATCTCTCAAAGGCACTTCGTGAGTATGGCGTCAATGTGAAACATCAAGAATACTTTGCTGATAGTCCTTCAACGGGAGTGGATTCTACTTCCAGAGAGGAATGA 1233 45.42 MAGSRGGRPFSTDSNKIDEPFKVEEAETVNVPPPPNEKLLVLGGNGFVGSHICQEALNRGLTVASLSRSGRSSIRDSWANHVIWHQGNLLSPDSLSEAFDGVTAVISCIGGFGSNSQMYKINGTANINAIRVASDKGVKRFVYISAADFGLANYLLQGYYEGKRAAETELLTKFPYGGVILRPGFIYGTRNVGSVKLPLGVIGSPLEMVLQHAKPLHQLPLVGPLFTPPVSVTSVARVSVRAATDPVFPPGIIDIYVTLHTSLISKRGKNLTEKMNHNQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEYFADSPSTGVDSTSREE* 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14076272 14084142 - Chy3G060450.1 Chy03g01065 223226

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01065 410 CDD TAF10 290 395 IPR003923 GO:0005634|GO:0006352
Chy03g01065 410 PANTHER BNAANNG24990D PROTEIN 8 256 - -
Chy03g01065 410 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 37 257 IPR036291 -
Chy03g01065 410 Gene3D - 26 255 - -
Chy03g01065 410 MobiDBLite consensus disorder prediction 1 22 - -
Chy03g01065 410 Pfam Transcription initiation factor TFIID 23-30kDa subunit 304 353 IPR003923 GO:0005634|GO:0006352
Chy03g01065 410 PANTHER NADH-UBIQUINONE OXIDOREDUCTASE 39 KDA SUBUNIT-RELATED 8 256 - -
Chy03g01065 410 Pfam NAD(P)H-binding 43 187 IPR016040 -
Chy03g01065 410 PRINTS Transcription initiation factor TFIID 23-30kDa subunit signature 370 392 IPR003923 GO:0005634|GO:0006352
Chy03g01065 410 PRINTS Transcription initiation factor TFIID 23-30kDa subunit signature 304 320 IPR003923 GO:0005634|GO:0006352
Chy03g01065 410 PRINTS Transcription initiation factor TFIID 23-30kDa subunit signature 324 346 IPR003923 GO:0005634|GO:0006352
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01065 - - - csv:101207328 486.493
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01065 Chy-Chr3:14076272 Chy04g00126 Chy-Chr4:1135680 7.52E-58 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g630 . . . . . . . . Cmo05g00338 . . Cma05g00336 . . . . . Bhi04g00078 Tan02g2789 . . . . Lcy13g1851 . . . . . . . . . Cone17ag0963 Cone20ag0304 . . . Cme03g01554 . . . . . . . . . . . . . . Car05g00280 Cpe11g00281 . . . . . . . . Cla08g01384 Cam08g1855 Cec08g1434 Cco08g1567 Clacu08g1551 . Cre08g1334 Lsi08g01268 . Chy03g01065 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007661 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 0 1 1 2 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01065 Chy_Chr03 FPKM 4.70535 4.552847 6.971926 6.06649 10.803345 12.631363 12.412671 6.838418 9.009999 8.375495