Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01067 ATGGCTTCCAAGCTTTGTGACTCGTGTAAGTCGGCAACAGCCACTCTCTTCTGCCGAGCTGACTCTGCTTTCCTTTGTCTTGGCTGTGACTCCAAAGTTCACGCAGCCAACAAGCTCGCCTCTCGCCATGCTCGTGTTTGGGTTTGTGAAGTCTGTGAGCAAGCTCCGGCTCATGTAACCTGTAAGGCTGACGCCGCCGCTCTCTGCCTCACTTGCGACCACGATATTCACTCTGCTAATCCCCTTGCACGCCGTCATGAACGAGTTCCAGTTACGCCTTTCTACGATACATCCAACTCTGACAACTCACTCCCTGTTAAACCTAGCGCTGCAATCAACTTCCTCGACGACCGTTACTTCTCCGATGTCGACGCTGATGCCGCCGATGTTAGTAGAGAAGAAGCCGAAGCTGCTTCCTGGCTTCTTCCCAACCCTAACCCTAAGGCAATCGAAAGTTCAGATCTGAACTCAGGCAAGTTTGAGTTTCCAGAAATGGATCCTTACCTAGATCTGGATTACGGTCATGTAGATCCGAAATTAGAAGCGCAAGAGCAGAATAGCTCCGGTGCCGATGGAGTTGTTCCTGTTCAAAGCAAAGGCGTTCATCTCTCATCAGTAAACGATCGTTGCCTTGGTATAGACTTCACCGGCACCAAATCGTTCCCGTACGGTCATAACCCTCAGTCAATCAGTCACAGTGTATCATCCTCTTCGATCGAGGTCGGAGTGGTGCCGGACGGGAACGCGATGACAGATGTATCAAATCCGTACACGAAACCTTCCACAGAATCATCTGTTCAACAGCTGCAAATCTCGCCGGCTGATCGGGAAGCGAGAGTGTTAAGGTACAGAGAGAAGAGGAAGAATAGAAAGTTCGAGAAGACGATCCGATACGCATCTCGTAAAGCTTACGCTGAGACGAGACCGCGAATCAAAGGACGGTTCGCCAAACGGACTGACATCGAACTTGATGTTGATCGAAGCAAAGTGTATCAATTTCTGATTTCCAATTGGTGA 1017 49.85 MASKLCDSCKSATATLFCRADSAFLCLGCDSKVHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCLTCDHDIHSANPLARRHERVPVTPFYDTSNSDNSLPVKPSAAINFLDDRYFSDVDADAADVSREEAEAASWLLPNPNPKAIESSDLNSGKFEFPEMDPYLDLDYGHVDPKLEAQEQNSSGADGVVPVQSKGVHLSSVNDRCLGIDFTGTKSFPYGHNPQSISHSVSSSSIEVGVVPDGNAMTDVSNPYTKPSTESSVQQLQISPADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDIELDVDRSKVYQFLISNW* 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14104800 14106311 + Chy3G060470.1 Chy03g01067 223228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01067 338 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Chy03g01067 338 ProSiteProfiles CCT domain profile. 276 318 IPR010402 GO:0005515
Chy03g01067 338 Pfam B-box zinc finger 4 43 IPR000315 GO:0008270
Chy03g01067 338 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
Chy03g01067 338 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Chy03g01067 338 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 2 330 IPR045281 GO:0009909
Chy03g01067 338 CDD Bbox1_BBX-like 5 48 - -
Chy03g01067 338 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 2 330 - -
Chy03g01067 338 SMART bboxneu5 1 48 IPR000315 GO:0008270
Chy03g01067 338 SMART bboxneu5 49 91 IPR000315 GO:0008270
Chy03g01067 338 Pfam CCT motif 276 318 IPR010402 GO:0005515
Chy03g01067 338 CDD Bbox1_BBX-like 48 91 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02192 Chy-Chr2:26089518 Chy03g01067 Chy-Chr3:14104800 3.04E-105 dispersed
Chy03g01067 Chy-Chr3:14104800 Chy05g00918 Chy-Chr5:13758625 1.20E-72 dispersed
Chy11g01928 Chy-Chr11:25396317 Chy03g01067 Chy-Chr3:14104800 1.67E-17 dispersed
Chy12g00152 Chy-Chr12:1727019 Chy03g01067 Chy-Chr3:14104800 4.46E-09 dispersed
Chy03g01067 Chy-Chr3:14104800 Chy02g02191 Chy-Chr2:26080814 1.27E-94 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17704 PF00643 zf-B_box 3.70E-06 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01067 - - csv:101208063 636.336