Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01067 ATGGCTTCCAAGCTTTGTGACTCGTGTAAGTCGGCAACAGCCACTCTCTTCTGCCGAGCTGACTCTGCTTTCCTTTGTCTTGGCTGTGACTCCAAAGTTCACGCAGCCAACAAGCTCGCCTCTCGCCATGCTCGTGTTTGGGTTTGTGAAGTCTGTGAGCAAGCTCCGGCTCATGTAACCTGTAAGGCTGACGCCGCCGCTCTCTGCCTCACTTGCGACCACGATATTCACTCTGCTAATCCCCTTGCACGCCGTCATGAACGAGTTCCAGTTACGCCTTTCTACGATACATCCAACTCTGACAACTCACTCCCTGTTAAACCTAGCGCTGCAATCAACTTCCTCGACGACCGTTACTTCTCCGATGTCGACGCTGATGCCGCCGATGTTAGTAGAGAAGAAGCCGAAGCTGCTTCCTGGCTTCTTCCCAACCCTAACCCTAAGGCAATCGAAAGTTCAGATCTGAACTCAGGCAAGTTTGAGTTTCCAGAAATGGATCCTTACCTAGATCTGGATTACGGTCATGTAGATCCGAAATTAGAAGCGCAAGAGCAGAATAGCTCCGGTGCCGATGGAGTTGTTCCTGTTCAAAGCAAAGGCGTTCATCTCTCATCAGTAAACGATCGTTGCCTTGGTATAGACTTCACCGGCACCAAATCGTTCCCGTACGGTCATAACCCTCAGTCAATCAGTCACAGTGTATCATCCTCTTCGATCGAGGTCGGAGTGGTGCCGGACGGGAACGCGATGACAGATGTATCAAATCCGTACACGAAACCTTCCACAGAATCATCTGTTCAACAGCTGCAAATCTCGCCGGCTGATCGGGAAGCGAGAGTGTTAAGGTACAGAGAGAAGAGGAAGAATAGAAAGTTCGAGAAGACGATCCGATACGCATCTCGTAAAGCTTACGCTGAGACGAGACCGCGAATCAAAGGACGGTTCGCCAAACGGACTGACATCGAACTTGATGTTGATCGAAGCAAAGTGTATCAATTTCTGATTTCCAATTGGTGA 1017 49.85 MASKLCDSCKSATATLFCRADSAFLCLGCDSKVHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCLTCDHDIHSANPLARRHERVPVTPFYDTSNSDNSLPVKPSAAINFLDDRYFSDVDADAADVSREEAEAASWLLPNPNPKAIESSDLNSGKFEFPEMDPYLDLDYGHVDPKLEAQEQNSSGADGVVPVQSKGVHLSSVNDRCLGIDFTGTKSFPYGHNPQSISHSVSSSSIEVGVVPDGNAMTDVSNPYTKPSTESSVQQLQISPADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDIELDVDRSKVYQFLISNW* 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14104800 14106311 + Chy3G060470.1 Chy03g01067 223228

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01067 338 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Chy03g01067 338 ProSiteProfiles CCT domain profile. 276 318 IPR010402 GO:0005515
Chy03g01067 338 Pfam B-box zinc finger 4 43 IPR000315 GO:0008270
Chy03g01067 338 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
Chy03g01067 338 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Chy03g01067 338 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 2 330 IPR045281 GO:0009909
Chy03g01067 338 CDD Bbox1_BBX-like 5 48 - -
Chy03g01067 338 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 2 330 - -
Chy03g01067 338 SMART bboxneu5 1 48 IPR000315 GO:0008270
Chy03g01067 338 SMART bboxneu5 49 91 IPR000315 GO:0008270
Chy03g01067 338 Pfam CCT motif 276 318 IPR010402 GO:0005515
Chy03g01067 338 CDD Bbox1_BBX-like 48 91 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01067 - - - csv:101208063 636.336
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02192 Chy-Chr2:26089518 Chy03g01067 Chy-Chr3:14104800 3.04E-105 dispersed
Chy03g01067 Chy-Chr3:14104800 Chy05g00918 Chy-Chr5:13758625 1.20E-72 dispersed
Chy11g01928 Chy-Chr11:25396317 Chy03g01067 Chy-Chr3:14104800 1.67E-17 dispersed
Chy12g00152 Chy-Chr12:1727019 Chy03g01067 Chy-Chr3:14104800 4.46E-09 dispersed
Chy03g01067 Chy-Chr3:14104800 Chy02g02191 Chy-Chr2:26080814 1.27E-94 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g625 . . . . Bpe02g01272 . . . Cmo05g00340 Cmo12g00329 . Cma05g00338 . . Sed11g1127 Cpe07g00334 . Bhi04g00075 Tan02g2785 Cmetu03g0258 . Hepe10g0202 . Lcy13g1849 . . . . . . . Cone4ag1724 Cone7ag1644 . . . . . Cme03g01557 . . . . . . Bma01g01259 . . . . . Cma12g00377 . Car05g00282 Cpe11g00283 . . . . . . . . Cla08g01382 Cam08g1853 Cec08g1431 Cco08g1564 Clacu08g1548 . Cre08g1331 Lsi08g01266 . Chy03g01067 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy03g01067 . 6 328 C2C2-CO-like Transcription Factor Family AT5G15850 50.1 2.1e-38 156.8
Chy03g01067 . 1 320 C2C2-CO-like Transcription Factor Family AT5G24930 63.2 4.5e-81 298.5
Chy02g02192 . 20 376 C2C2-CO-like Transcription Factor Family AT5G24930 50.9 5.3e-58 221.9
Chy02g02192 . 1 376 C2C2-CO-like Transcription Factor Family AT5G57660 52.1 1.0e-69 260.8
Chy02g02191 CCT 15 366 C2C2-CO-like Transcription Factor Family AT5G57660 50.6 3.1e-58 222.6
Chy03g01067 . 2 331 C2C2-CO-like Transcription Factor Family AT5G57660 51.0 5.6e-52 201.8
Chy11g00733 CCT 34 447 C2C2-CO-like Transcription Factor Family AT3G07650 54.5 7.1e-90 327.8
Chy01g00545 CCT 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 54.9 6.0e-89 324.7
Chy11g00733 CCT 34 447 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 1.1e-87 320.5
Chy01g00545 CCT 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 55.1 3.7e-86 315.5
Chy11g00733 CCT 34 447 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 1.1e-87 320.5
Chy01g00545 CCT 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 55.1 3.7e-86 315.5
Chy11g00343 . 1 124 C2C2-CO-like Transcription Factor Family AT1G75540 65.9 2.4e-41 166.4
Chy07g00978 . 1 298 C2C2-CO-like Transcription Factor Family AT1G78600 51.5 1.1e-78 290.4
Chy07g01229 . 1 184 C2C2-CO-like Transcription Factor Family AT2G21320 60.9 3.4e-55 211.5
Chy02g00591 . 1 117 C2C2-CO-like Transcription Factor Family AT2G21320 76.1 2.2e-49 192.2
Chy07g01229 . 1 201 C2C2-CO-like Transcription Factor Family AT4G38960 60.2 2.3e-57 218.8
Chy02g00591 . 1 110 C2C2-CO-like Transcription Factor Family AT4G38960 80.0 6.7e-49 190.7
Chy11g00343 . 1 124 C2C2-CO-like Transcription Factor Family AT4G39070 67.7 2.6e-40 162.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010751 0 1 0 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 2 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17704 PF00643 zf-B_box 3.70E-06 No_clan Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01067 Chy_Chr03 FPKM 16.586075 18.093966 30.756413 29.631685 34.425743 35.835781 34.99448 10.561728 8.933758 10.012409