Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01071 ATGAGGCCATTGTCAGCAGTTGGGACATCTTTTCGAGCTTTGTCCAATCTTTTGTTAAACCATTCTCTGGCCGTCAAATTGGGTACCATTGCAGACGTTTATATTTGCAACAATATCCTCAATGGGTATTGGAAATGCAAAGAGTTACGATCTGCAGATGTACTGTTCGACGAAATGCCGCTGAGAGACTCTGTATCATGGAATACGATGATCGCGGGGCATATAAACTGTGGAAACTTGGAGGCTTCATGGGATGTTCTTAGGTGCATGAGAAGTTGTGGTTTTGAGCTGGATAGATATACCTTTGGAAGCATGCTGAAAGGCATTGCTTTTGCTGGAATGTTTGATTTGGGTCAGCAAGTACATTCTATGATCATTAAGATGGGTTATGCTGGAAATGTATATGCAGGGAGTGCTCTCTTAGACATGTATGCAAAATGTGAGAGACTTGAGGATGCATATTTGTCGTTCTTAAGTATATCGAATCACAACACTGTTTCGTGGAATGCAATGATTAATGGATATGCTCAAGCCGGTGACCGTGAGACCGCATTTTGGTTGTTAGATTGCATGGAGCAAGAAGGTGAGAAGGTTGATGATGGCACATATGCTCCTCTTTTGCCTTTGCTTGATGATGCTGACTTCTGTAACTTAACAAGCCAACTCCATGGAAAAATTATAAAACATGGATTGGAACTTGTTAATACAATGTGTAATGCCTTGATCACTTCTTATTCAAAATGTGGATCCCTTGATGATGCCAAAAGGATTTTCGATAGTTCGGCAGGCATTTGGGATTTAGTTACATGGAACTCCTTGTTGGCTGCTTACCTGTTGCGTAGTCAGGAAGATCTTGCTTTTAAACTCTTGATTGACATGCAAGAACATGGTTTTGAACCAGACTTGTATTCATACACAAGCATCATCAGTGCTTGTTTTAACGAAAATATTAGCAATAATGGTAAATCCTTACATGGGTTGGTGATAAAGAGAGGATTTGAACAGTCGGTGCCAATTTCAAATGCATTGATTTCTATGTATCTTAAATCAGACTATGGCTCAATGAAAGAAGCCCTATGTATATTTGAATCCTTGGAGTTTAAGGACCGTGTGTCTTGGAACTCAATCTTAACTGGATTATCACAAACGGGGTCGAGCGAAGATGCAGTGAAGTCTTTTCTGCATATGAGATCTGCAGCAATGGACATTGATCACTATTCCTTTTCTGCCGTACTCAGATCATGTTCGGATTTGGCTACATTTCAATTGGGACAACAGATTCATGTCTTGGCACTTAAATACGGTTTGGAGTCCAATGAGTTTGTTTCAAGTTCTTTAATTTTCATGTATTCCAAGTGTGGAATTATTGAAGATGCTAGAAAATCATTTGAAGAGGCTTCAAAGAACTCTTCAATCACTTGGAATGCACTTATGTTTGGTTATGCCCAACATGGTCAGTGCAATGTTGCATTAGACCTCTTCTTTCTAATGGAAGAAAAAAAGGTGAAAATGGATCACATAACCTTCGTTGCAGTTCTGACCGCCTGTAGCCATATTGGTTTAGTAGAACAAGGCTGCAAATTCCTGCGGTGTATGGAATCTGATTACGGCGTTCCTCCACGGATGGAGCACTATGCTTGTGCAGTTGATCTATACGGGCGTTCTGGACGTCTTGAAGAAGCGAAGGCCTTGATTGAAGAAATGCCATTCAAACCAGACACCACCGTGTGGAAGACATTCTTGGGTGCGTGCCGCTCTTGTGGCAACATTGAGTTAGCTTGTCAGGTTGCAGGCCATCTGCTAGAGATGGAGCCTGAAGAGCATTGCACTTATGTTCTTCTCTCAAACATGTATGGAAATTTAATGAGATGGGATGAGAAGGCCAAAGTGAAAAGGCTAATGAAGGAAAGAGGAGTTAAGAAAGTCCCTGGTTGGAGTTGGATTGAAGTTAACAACAATGTACATGCTTTCATTGCACAAGATCATTCTCATCCCAGTTGCCAACAGATCTACTTTTTGCTTGAAGTACTTTTGGAGGAAATCACAAGAATGGAAGATGCTGATGGTTTTGAGAGTTTTTTGGAGCAGGAAGAATTAAGCTATGCAAATGCATAA 2115 40.76 MRPLSAVGTSFRALSNLLLNHSLAVKLGTIADVYICNNILNGYWKCKELRSADVLFDEMPLRDSVSWNTMIAGHINCGNLEASWDVLRCMRSCGFELDRYTFGSMLKGIAFAGMFDLGQQVHSMIIKMGYAGNVYAGSALLDMYAKCERLEDAYLSFLSISNHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDDGTYAPLLPLLDDADFCNLTSQLHGKIIKHGLELVNTMCNALITSYSKCGSLDDAKRIFDSSAGIWDLVTWNSLLAAYLLRSQEDLAFKLLIDMQEHGFEPDLYSYTSIISACFNENISNNGKSLHGLVIKRGFEQSVPISNALISMYLKSDYGSMKEALCIFESLEFKDRVSWNSILTGLSQTGSSEDAVKSFLHMRSAAMDIDHYSFSAVLRSCSDLATFQLGQQIHVLALKYGLESNEFVSSSLIFMYSKCGIIEDARKSFEEASKNSSITWNALMFGYAQHGQCNVALDLFFLMEEKKVKMDHITFVAVLTACSHIGLVEQGCKFLRCMESDYGVPPRMEHYACAVDLYGRSGRLEEAKALIEEMPFKPDTTVWKTFLGACRSCGNIELACQVAGHLLEMEPEEHCTYVLLSNMYGNLMRWDEKAKVKRLMKERGVKKVPGWSWIEVNNNVHAFIAQDHSHPSCQQIYFLLEVLLEEITRMEDADGFESFLEQEELSYANA* 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14131231 14133345 - Chy3G060510.1 Chy03g01071 223232

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01071 704 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 266 300 IPR002885 -
Chy03g01071 704 PANTHER BNAA02G27730D PROTEIN 85 696 - -
Chy03g01071 704 PANTHER BNAA02G27730D PROTEIN 21 86 - -
Chy03g01071 704 PANTHER OS01G0913400 PROTEIN-RELATED 85 696 - -
Chy03g01071 704 PANTHER OS01G0913400 PROTEIN-RELATED 21 86 - -
Chy03g01071 704 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 164 198 IPR002885 -
Chy03g01071 704 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 470 504 IPR002885 -
Chy03g01071 704 Gene3D Tetratricopeptide repeat domain 213 323 IPR011990 GO:0005515
Chy03g01071 704 Gene3D Tetratricopeptide repeat domain 115 212 IPR011990 GO:0005515
Chy03g01071 704 Gene3D Tetratricopeptide repeat domain 18 114 IPR011990 GO:0005515
Chy03g01071 704 Gene3D Tetratricopeptide repeat domain 324 423 IPR011990 GO:0005515
Chy03g01071 704 Pfam PPR repeat family 164 204 IPR002885 -
Chy03g01071 704 Pfam PPR repeat family 470 517 IPR002885 -
Chy03g01071 704 Pfam PPR repeat family 63 109 IPR002885 -
Chy03g01071 704 Pfam PPR repeat family 266 313 IPR002885 -
Chy03g01071 704 TIGRFAM PPR: pentatricopeptide repeat domain 65 98 IPR002885 -
Chy03g01071 704 TIGRFAM PPR: pentatricopeptide repeat domain 237 259 IPR002885 -
Chy03g01071 704 TIGRFAM PPR: pentatricopeptide repeat domain 166 199 IPR002885 -
Chy03g01071 704 TIGRFAM PPR: pentatricopeptide repeat domain 268 301 IPR002885 -
Chy03g01071 704 TIGRFAM PPR: pentatricopeptide repeat domain 472 505 IPR002885 -
Chy03g01071 704 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 63 97 IPR002885 -
Chy03g01071 704 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 369 403 IPR002885 -
Chy03g01071 704 Gene3D Tetratricopeptide repeat domain 447 672 IPR011990 GO:0005515
Chy03g01071 704 Pfam PPR repeat 237 259 IPR002885 -
Chy03g01071 704 Pfam PPR repeat 371 398 IPR002885 -
Chy03g01071 704 Pfam PPR repeat 548 568 IPR002885 -
Chy03g01071 704 Pfam PPR repeat 35 60 IPR002885 -
Chy03g01071 704 Pfam E motif 589 649 IPR046848 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01071 - - - csv:101204281 1393.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01071 Chy-Chr3:14131231 Chy01g00033 Chy-Chr1:224621 1.01E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g612 . . . . . . . . Cmo05g00344 . . Cma05g00341 . . . . . Bhi04g00070 . . . . . Lcy13g1845 . . . . . . . . . . Cone20ag0308 . . . Cme03g01561 . . . . . . . . . . . . . . Car05g00286 Cpe11g00286 . . . . . . . . Cla08g01378 . . . . . . Lsi08g01262 . Chy03g01071 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011939 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0 1 1 0 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01071 Chy_Chr03 FPKM 6.748634 6.884716 11.206845 9.44576 1.055107 2.257074 4.934518 28.948051 25.259418 29.266407