Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01077 ATGGAGCTTAAGCTTACTCCCCAGCAACTGCTAGCCTACAATGGCAGCGACCGATCAAAGCCTATGTATGTGGCTTTGAAAGGCCGCATCTACGATGTCACAAAATCCGTTTTATTGTACGGCCCCGGTGGGTCTTACAGCATGTTCGCCGGCAAGGATGTGAGCAGAGCTCTGGCCAAGATGAGCAAGAACGTATCGGACATCACCTCTTCGCTCGTGGGCCTTTCTGAGAAAGAAATCAGTGTTCTCAACAATTGGGAGAAGAAATTTCAAGCTAAGTACCCTATTTTGAAGCTACCGTCCGCGTCCCTCATTCCGATCAATCCCCTCCAAGCTAAGCTAATGGAGCTTACACCTCTGCAACTGTCGACCTACAATGGCACCGACTCAACAAAGCCCATCTATGTTGCTTTGAAGGGCCAAATCTACAACGTCACATCAGGCCGTTCTTTCTACGGCTCCGGTGGTCCCTACGCCATGTTCGCCGGCAAGGACGCGAGCAGAGCTCTGGCCAAGATGACCAAGAATGAGGAGGATATCACCTCTTCACTCGAAGGCCTCTCTGAGAAAGAGATCGGTGTTCTCAACGACTGGGAGAACAAATTTCAAGCTAAGTACCCTATTGTTGGCCGTGTTGTTTCTTAA 645 49.92 MELKLTPQQLLAYNGSDRSKPMYVALKGRIYDVTKSVLLYGPGGSYSMFAGKDVSRALAKMSKNVSDITSSLVGLSEKEISVLNNWEKKFQAKYPILKLPSASLIPINPLQAKLMELTPLQLSTYNGTDSTKPIYVALKGQIYNVTSGRSFYGSGGPYAMFAGKDASRALAKMTKNEEDITSSLEGLSEKEIGVLNDWENKFQAKYPIVGRVVS* 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14158785 14160311 + Chy3G060570.1 Chy03g01077 223238

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01077 214 SMART Cyt_b5_2 5 100 IPR001199 -
Chy03g01077 214 SMART Cyt_b5_2 117 213 IPR001199 -
Chy03g01077 214 PANTHER MEMBRANE-ASSOCIATED PROGESTERONE RECEPTOR COMPONENT-RELATED 113 213 - -
Chy03g01077 214 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 110 213 IPR036400 -
Chy03g01077 214 PANTHER CALCUTTA CUP-RELATED 113 213 - -
Chy03g01077 214 Pfam Cytochrome b5-like Heme/Steroid binding domain 120 212 IPR001199 -
Chy03g01077 214 Pfam Cytochrome b5-like Heme/Steroid binding domain 6 62 IPR001199 -
Chy03g01077 214 PANTHER MEMBRANE-ASSOCIATED PROGESTERONE RECEPTOR COMPONENT-RELATED 4 100 - -
Chy03g01077 214 Gene3D - 114 214 IPR036400 -
Chy03g01077 214 Gene3D - 2 98 IPR036400 -
Chy03g01077 214 PANTHER CALCUTTA CUP-RELATED 4 100 - -
Chy03g01077 214 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 4 96 IPR036400 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01077 K17278 PGRMC1_2; membrane-associated progesterone receptor component - csv:101210009 197.978
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01077 Chy-Chr3:14158785 Chy04g01708 Chy-Chr4:23502791 1.26E-29 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g598 . . Bda01g00658 . . Bpe02g00531 . Bma01g02176 Cmo05g00346 . . Cma05g00342 . . Sed11g1134 . . Bhi04g00061 Tan02g2775 Cmetu03g1614 . . . Lcy13g1841 . . . . . . . Cone1ag1152 Cone5ag0861 Cone14ag0095 Cone15ag0101 . . . Cme03g01566 . . . . . . . . . . . . . . Car05g00288 Cpe11g00288 . . . . . . . . Cla08g01375 Cam08g1844 Cec08g1422 Cco08g1555 Clacu08g1539 . Cre08g1322 Lsi08g01257 . Chy03g01077 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005082 1 2 0 1 1 2 1 2 2 1 2 2 1 1 2 1 2 2 1 2 2 1 1 0 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01077 Chy_Chr02 FPKM 176.644058 176.989532 246.635651 243.101486 170.874664 202.621063 187.507904 192.797043 202.217499 211.496185
Chy03g01077 Chy_Chr03 FPKM 312.196136 325.106415 194.577744 185.449265 283.613464 350.935516 279.064453 224.534409 212.930328 214.093689
Chy03g01077 Chy_Chr07 FPKM 328.141541 353.829712 282.13739 269.74881 280.89621 389.189514 279.981171 381.262848 369.092651 346.410278
Chy03g01077 Chy_Chr20 FPKM 373.608765 395.734314 300.883789 290.731079 250.87146 267.086853 249.378159 345.404053 358.88501 365.496979