Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01079 ATGAATGTAAACGCTGTCATGGCTAACAGGCACACCATTCTTCTTATGCAAACGTCACACAACAGGGCAACTAGGACTTTTATGGATTACGATTCAATAAGTCAAGCTATGGATGGTATATGTGGGCTGTATGAAAGGAAGCTTAAGGACTTAAATCCAGCCATCAGAAATATCACTTATGATATTGCTGATCTCTACAATTTCATTGATGGCCTCGCTGATATGAGCGCTCTAGTGTCCGTTGAGCTAGAAATAAACAAGAAGTGGGTAAAATGGGAGAGTAACAGAGAGGAAGATGAAACTGCTCGATTGTATGCGGAATTTGTGGAGTCATTTCAAGGAGATAATGCACCTGGGTCTAAGACTTTTGTTCGTGGAGGAACTATCAACCCCAACGAGAAATTGAAGAGTGAATCTGAGGGTGAAAAGTCCAAAGATGGGGTATCTGTTCCAAAGAAGGGAAGTAGATATGTGCCATCTTTCATTCCACCTCCATTGGCATCCAAGGGAAAAGAATCTGACAAGAAGGAGCTGGAAAAGCCAAAGGAGAAAGAAAAGGGGAAGTCTAGGAACATTGATCATTTTATGGAGGAGCTGAAGCATGAGCAAGAGCTGAGGGAAAGACGAAATCAAGATCGTGAACATTGGCGTGAAGGACGCCATGGGGAAATCTCAACGCCATCTAGTCGATTTGATGAACTGCCTGACGACTTTGATCCCAGTGGAAAGTTCCCTGGATCATTTGATGATGGAGATCCTCAAACGACTAACCTTTATGTAGGAAATTTATCTCCACAGGTTGATGAGAATTTCCTCCTTCGAACTTTTGGAAGATTTGGACCAATTGCTAGTGTAAAGATAATGTGGCCAAGGACAGAGGAGGAACGAAGACGGCAAAGAAATTGTGGATTTGTAGCTTTCATGAATAGAGCGGATGGACAGGCTGCAAAGGATGAAATGCAGGGAGTTGTTGTTTATGGGTATGAGCTGAAAATTGGATGGGGAAAGTCTGTTGCTCTTCCTTCTCAAGCATTACCTGCGCCTCCTCCAGGTCATATGGCCATTAGAAGTAAGGAGGGTGGCACTGTTATCTTATCTGGCTCATCAGGACCGCCAGTCACTTCTGTCCCAAATCAAAATTCTGAACTGGTTCTGACACCCAACATTCCTGATATTACTGTTGAACCACCTGAGGATGATCATCTCCGCCATGTCATTGACACTATGGCTCTTTATGTTCTGGATGGAGGTTGTGTTTTTGAACAAGCTATTATGGAGAGGGGTCGGGGAAATCCTCTCTTCAACTTCTTGTTTGAGCTTGGTTCAAAAGAACATACTTACTATGTTTGGCGACTTTATTCATTTGCTCAGGGGGATACTCTTCAAAGGTGGAGAACTGAACCTTTTATCATGATAACTGGTAGTGGGAGATGGGTTCCACCACCTCTTCCAACTGCTAAAAGCCCAGAACTTGAGAAGGAGTCTGGACCCACCTATGCTGCTGGAAGAAGCAGACGCATGGAGCTTGAAAGAACATTAACTGATTCACAAAGGGATGAGTTTGAGGACATGCTTCGGGCATTGACACTAGAAAGGAGTCAGATAAAGGAAGCAATGGGGTTTGCTTTGGATAATGCTGATGCAGCTGGAGAGATAGTTGAAGTTCTAACAGAATCTTTAACGCTTAGAGAAACTCCTATTCCAACCAAAGTTGCAAGGTTGATGCTTGTGTCTGATATCCTTCATAACAGTAGCGCTCCTGTAAAGAATGCATCTGCATACCGCACGAAATTTGAAGCAACATTACCCGACATCATTGAGAGCTTCAATGATCTATATCGCAGCATAACAGGGAGAATTACGGCAGAAGCTCTCAAGGAACGAGTACTGAAATTATTGCAAGTATGGTCCGATTGGTTTCTGTTCTCAGATGCTTATGTGAATGGATTGCGAGCCACGTTTCTTCGCTTGGGAAACTCTGGTGTGATCCCTTTTCATTCATTATGTGGTGATGCCCCTGAGATTGAACGGAAGGCCAATTGTGATGATTTAGGAGATGGGAATAAAATCAATCAAGATGCTGAATTGGCAATGGGCAAAGGAGGAGCTATGAAGGAGTTAATGAATCTTCCCTTTGGAGAATTGGAAAGACGGTGCAGGCATAATGGGTTGTCTCTTGTTGGTGGTAGAGAAATGATGGTTGCACGTTTACTAAGTCTTGAAGAGGCAGAAAAACTGAGTGGATATGAACTTGATGAAGACTTAAAATATAGTAATTCTCATTCTGGAAGATATTCAAGTAGCTCAAGAGAGACTAAAGTTGAACGAGGTCCAGCAGAAACTTCGGGTTGGAGCCGTTTTGGGGATGATGAGGCAGATTTCCAAAGGATGGGTTCTGTGCCTTTGGCTCAAACTCTTTCCATTCCACAGCCTGAACTAAAAGGCTTCACAAAGTCTGGAAAAAATGATCCTGTTTTGCCTGCCTCTAAATGGGCTAGGGAGGATGATGAAAGTGACAATGAGCAAAAAGGAGGTACTAGGGGTCTCGGCTTAAGTTATTCATCTTCTGGAAGTGAAAATGCAGGTGATGGTCCTAGTAAAGCTGATGAGATGGAGATTACTACGGAGCCAAGTGCCCTTATGCAACCTGATAGTGGGTTGAATGAAGAGCAGAGGCAAAAGTTAAGACGTGTAGAAGTGGCTTTGATCGAATACCGTGAATCCTTAGAAGAACGGGGCATCAAAAGTACAGAGGAAATTGAGAGGAAAGTTCTGATATATCGGAAACAACTAGAATCTGAATATGGACTCTCAGATTCCAATGAGACTGCATCAAGGAAGAAGAGGAGGGATAGACCGGAAGATAGTCATGAGTCATCAAGGAAGCTGCATCGTAGCCAGAGCCACAGTGATAGCCCAGTACGAAAGTCATCAAACCGAGACAGAGACAGGGAAAATGACGTGGACAAAGAGCGAGAAAGATCACGAGACAGGGACCGGGAAAAGAGTGGAAGCAGAGAAAGGGATGATCACGACCGAGATAGAGGTAAAGAAAGAGATAGGGATAGGAGAAAACGAGGAAAATAA 3087 43.54 MNVNAVMANRHTILLMQTSHNRATRTFMDYDSISQAMDGICGLYERKLKDLNPAIRNITYDIADLYNFIDGLADMSALVSVELEINKKWVKWESNREEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNEKLKSESEGEKSKDGVSVPKKGSRYVPSFIPPPLASKGKESDKKELEKPKEKEKGKSRNIDHFMEELKHEQELRERRNQDREHWREGRHGEISTPSSRFDELPDDFDPSGKFPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYGYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGGTVILSGSSGPPVTSVPNQNSELVLTPNIPDITVEPPEDDHLRHVIDTMALYVLDGGCVFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWVPPPLPTAKSPELEKESGPTYAAGRSRRMELERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLRETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIIESFNDLYRSITGRITAEALKERVLKLLQVWSDWFLFSDAYVNGLRATFLRLGNSGVIPFHSLCGDAPEIERKANCDDLGDGNKINQDAELAMGKGGAMKELMNLPFGELERRCRHNGLSLVGGREMMVARLLSLEEAEKLSGYELDEDLKYSNSHSGRYSSSSRETKVERGPAETSGWSRFGDDEADFQRMGSVPLAQTLSIPQPELKGFTKSGKNDPVLPASKWAREDDESDNEQKGGTRGLGLSYSSSGSENAGDGPSKADEMEITTEPSALMQPDSGLNEEQRQKLRRVEVALIEYRESLEERGIKSTEEIERKVLIYRKQLESEYGLSDSNETASRKKRRDRPEDSHESSRKLHRSQSHSDSPVRKSSNRDRDRENDVDKERERSRDRDREKSGSRERDDHDRDRGKERDRDRRKRGK* 1029
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14169768 14187346 - Chy3G060590.1 Chy03g01079 223240

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01079 1028 ProSiteProfiles SURP motif repeat profile. 405 448 IPR000061 GO:0003723|GO:0006396
Chy03g01079 1028 ProSiteProfiles CID domain profile. 513 658 IPR006569 -
Chy03g01079 1028 MobiDBLite consensus disorder prediction 927 1028 - -
Chy03g01079 1028 MobiDBLite consensus disorder prediction 941 1021 - -
Chy03g01079 1028 PANTHER - 72 1023 - -
Chy03g01079 1028 SUPERFAMILY Surp module (SWAP domain) 379 460 IPR035967 GO:0003723|GO:0006396
Chy03g01079 1028 Gene3D Enhancer of rudimentary 9 102 IPR035912 -
Chy03g01079 1028 MobiDBLite consensus disorder prediction 845 862 - -
Chy03g01079 1028 SMART surpneu2 403 457 IPR000061 GO:0003723|GO:0006396
Chy03g01079 1028 Gene3D - 167 339 IPR012677 -
Chy03g01079 1028 Gene3D - 514 658 IPR008942 -
Chy03g01079 1028 MobiDBLite consensus disorder prediction 117 245 - -
Chy03g01079 1028 SUPERFAMILY ERH-like 10 92 IPR035912 -
Chy03g01079 1028 PANTHER RNA PROCESSING PROTEIN LD23810P 72 1023 - -
Chy03g01079 1028 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 256 337 IPR000504 GO:0003723
Chy03g01079 1028 SMART 558neu5 520 655 IPR006569 -
Chy03g01079 1028 Gene3D - 887 938 - -
Chy03g01079 1028 Coils Coil 888 908 - -
Chy03g01079 1028 Gene3D Surp module 391 460 IPR035967 GO:0003723|GO:0006396
Chy03g01079 1028 Pfam cwf21 domain 888 934 IPR013170 -
Chy03g01079 1028 MobiDBLite consensus disorder prediction 169 239 - -
Chy03g01079 1028 Pfam CID domain 520 648 IPR006569 -
Chy03g01079 1028 Pfam Surp module 403 455 IPR000061 GO:0003723|GO:0006396
Chy03g01079 1028 SUPERFAMILY RNA-binding domain, RBD 249 347 IPR035979 GO:0003676
Chy03g01079 1028 MobiDBLite consensus disorder prediction 135 150 - -
Chy03g01079 1028 MobiDBLite consensus disorder prediction 757 791 - -
Chy03g01079 1028 CDD RRM_SR140 255 338 IPR035009 -
Chy03g01079 1028 Pfam Enhancer of rudimentary 10 91 IPR000781 -
Chy03g01079 1028 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 258 331 IPR000504 GO:0003723
Chy03g01079 1028 SMART rrm1_1 257 333 IPR000504 GO:0003723
Chy03g01079 1028 MobiDBLite consensus disorder prediction 805 892 - -
Chy03g01079 1028 SMART cwf21_2 887 936 IPR013170 -
Chy03g01079 1028 Coils Coil 518 538 - -
Chy03g01079 1028 MobiDBLite consensus disorder prediction 828 843 - -
Chy03g01079 1028 SUPERFAMILY ENTH/VHS domain 515 654 IPR008942 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01079 K12842 SR140; U2-associated protein SR140 - csv:101209274 1700.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01079 Chy-Chr3:14169768 Chy06g00819 Chy-Chr6:5753157 0 dispersed
Chy03g01079 Chy-Chr3:14169768 Chy07g00112 Chy-Chr7:986775 1.29E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g593 . . . . . . . . Cmo05g00349 Cmo12g00320 . Cma05g00345 . . Sed11g1137 . . Bhi04g00056 Tan02g2769 Cmetu03g0116 . Hepe10g0212 . . . . . . . . . Cone4ag1739 Cone7ag1659 . . . . . Cme03g01571 Blo17g00001 . . . . . . Bma02g00005 . . . . Cma12g00367 . Car05g00291 . . . . . . . . . Cla08g01371 Cam08g1840 Cec08g1418 Cco08g1551 Clacu08g1535 . Cre08g1318 Lsi08g01253 . Chy03g01079 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005029 1 2 1 1 1 1 2 1 1 3 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 1 1 2 3 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01079 Chy_Chr03 FPKM 13.622164 16.670557 9.268744 11.259546 6.182413 6.532377 6.066948 13.514932 12.942553 13.972746