Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01080 ATGTTACAGCCATTCCGGTGGCTTAAAATGCTTTCAACGGAGCTACATCCAAGTTTCATCGCCGGAGTAATCCTCATCTACGGTCTAAGCCACGGCTTCTCCGGCTCTTATTTCAAAGTCGTTTCCGATTACTACTGGAAAGACGTACAAAAGCTACAACCCTCAGTAGTTCAGATCTACATCGGGATATACACGATTCCATGGGTGATGAAGCCAATTTGGGGGTTATTGACGGACGCGTTTCCAGTGAGAGGGTATTTGCGGCGGCCGTATTTCGTGATTTCGGGGGTGGTTGGAGCAACGGCGGCTGTTGGGGTGGCAGTGAAAGGGGGATTGGGGGTTTTGGAAGCATTAGGGCTTTTGATTGGGATTTCAGGGGCGATGGCGATTGCGGATGTGACGATTGATGCTTGCATTGTGAGAAATAGCATTGAAGTTCAGTGGTTAGCGCAAGATTTGCAAAGCTTGTGTGGAGCTTGTTCTTCGATTGGGCATTTGATTGGATATTCAACTAGTGGATTTTTTGTTCATCTTCTTGGCGCTCAGGAAGCACTTGGAATCTTGGCAATTCCACCAGCCTTGATAGTCTTGTTGGGGTTCTTCATACATGAGACACCATCCCCCACCCTCCAATATAATGGGAAGTCCAAGGGAGGAAGTATAAACCAAGTGGGAGTTGCGATAAGAGACACGTGCAAAGCCATCAAATATCCACAGGTGTGGAGGCCTTCCCTTTTCATGTTTTTATGCCTTTCTCTTAGCATAAGTACCCACGAGGGACAATTTTATTGGTACACAGACAAGAAAGCTGGACCTGCCTTTTCTCAGGAATCGGTAGGCCTAATTTACGCAGTCGGCTCAGCGGCATCACTAATTGGAGTACTAATCTACCACAAAACTCTAAGAGACTTAAAATTCCGACGAATCCTCTTCTTCGCTCAACTCTTTTACGGCGTCGCCGGATTTCTCGACGTCATCTTCGTCCTCCGTTGGAATTTAGCCTTAAAAATTCCAGATGAGTTATTCGTGGTCATTGAAGAGTGCGTTACTCGAATCGTGACGCGAATCCGATGGACGCCGATGATGGTTCTGAACACTCGACTATGTTCCGTTGGAATCGAAGGGACGTTCTTTGCATTGTTGGCTTGTATTGATAGTTTGGGGACGTTGTGCTCAAAGTGGAGCGGGGGATTGGTGCTCGATGCGTTTGGAGTAACGAGGAGTGATTTTAGGAACTTGTGGTTGGTGGTTCTGCTTCGAACTGTGTTGAGATTTGTGGTTGTGGGGTTCGTTTTTCTTGTTCCCGATGCGAATCAAACAGACATTTTGATTCCGGGTGATCATACGATGGTTAGAAAGAGTAGTTCGGAAGATGGGGATAACATTCCTCTTGTTTCCATGAAAAGCGAGGGTCGAGATTAG 1422 46.69 MLQPFRWLKMLSTELHPSFIAGVILIYGLSHGFSGSYFKVVSDYYWKDVQKLQPSVVQIYIGIYTIPWVMKPIWGLLTDAFPVRGYLRRPYFVISGVVGATAAVGVAVKGGLGVLEALGLLIGISGAMAIADVTIDACIVRNSIEVQWLAQDLQSLCGACSSIGHLIGYSTSGFFVHLLGAQEALGILAIPPALIVLLGFFIHETPSPTLQYNGKSKGGSINQVGVAIRDTCKAIKYPQVWRPSLFMFLCLSLSISTHEGQFYWYTDKKAGPAFSQESVGLIYAVGSAASLIGVLIYHKTLRDLKFRRILFFAQLFYGVAGFLDVIFVLRWNLALKIPDELFVVIEECVTRIVTRIRWTPMMVLNTRLCSVGIEGTFFALLACIDSLGTLCSKWSGGLVLDAFGVTRSDFRNLWLVVLLRTVLRFVVVGFVFLVPDANQTDILIPGDHTMVRKSSSEDGDNIPLVSMKSEGRD* 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14189870 14192997 - Chy3G060600.1 Chy03g01080 223241

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01080 473 Gene3D MFS general substrate transporter like domains 19 434 IPR036259 -
Chy03g01080 473 PANTHER FOLATE-BIOPTERIN TRANSPORTER 1, CHLOROPLASTIC 1 460 IPR039309 -
Chy03g01080 473 SUPERFAMILY MFS general substrate transporter 23 432 IPR036259 -
Chy03g01080 473 Pfam BT1 family 244 441 IPR039309 -
Chy03g01080 473 Pfam BT1 family 39 198 IPR039309 -
Chy03g01080 473 PANTHER FOLATE-BIOPTERIN TRANSPORTER 6-RELATED 1 460 - -
Chy03g01080 473 CDD MFS_FBT 22 421 - -
Chy03g01080 473 MobiDBLite consensus disorder prediction 451 473 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01080 - - - csv:101204527 855.514
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01080 Chy-Chr3:14189870 Chy06g00419 Chy-Chr6:2848816 6.93E-12 dispersed
Chy03g01078 Chy-Chr3:14165003 Chy03g01080 Chy-Chr3:14189870 1.44E-144 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g592 . . . . . . . . Cmo05g00350 . . Cma05g00346 . . Sed11g1138 . . Bhi04g00055 Tan02g2767 Cmetu03g2109 . Hepe10g0213 . Lcy13g1837 . . . . . . . . . Cone17ag0975 Cone20ag0317 . . . Cme03g01573 . . . . . . . . . . . . . . Car05g00292 Cpe11g00291 . . . . . . . . Cla08g01370 Cam08g1839 . Cco08g1550 Clacu08g1534 . Cre08g1317 Lsi08g01252 . Chy03g01080 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012952 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01080 Chy_Chr03 FPKM 2.241935 2.195346 1.5908 1.70161 1.16856 1.110335 0.392759 2.678478 2.33425 3.491676