Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01084 ATGTCGGACGAAGAGCATCATTTTGAGTCCAAGGCCGACGCCGGAGCCTCCAAGACCTTCCCTCAACAGGCCGGAACCATCCGCAAGAATGGCTACATTGTCATCAAGGGCCGTCCCTGCAAGGTAGTTGAGGTTTCAACATCCAAGACTGGAAAGCATGGGCATGCTAAATGTCACTTTGTTGCAATCGATATCTTCACTGGCAAAAAAGTTGAAGATATTGTTCCATCATCCCACAACTGTGATGTTCCTGAGGTAACTCGTACCGATTATCAGCTTATTGACATATCTGAAGATGGATTTGTGAGTCTCTTGACTGACAATGGAAGCACAAAGGATGATTTGAGGCTTCCTACTGATGAAAGTTTACTTGCTCAGATTAAAGATGGATTTGCAGAAGGAAAGGACCTTGTTGTGAGTGTCATGTCAGCCATGGGAGAAGAACAAATTTGTGGCTTGAAGGATATCGGCCCAAAGAACTAA 483 44.93 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKVEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLPTDESLLAQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKN* 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14216586 14218833 - Chy3G060640.1 Chy03g01084 223245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01084 160 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 86 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Chy03g01084 160 Gene3D - 1 85 IPR014722 -
Chy03g01084 160 PANTHER BNAA07G09420D PROTEIN 1 156 - -
Chy03g01084 160 TIGRFAM eIF_5A: translation elongation factor IF5A 18 152 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Chy03g01084 160 Gene3D - 86 159 IPR012340 -
Chy03g01084 160 CDD S1_eIF5A 86 156 - -
Chy03g01084 160 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 156 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Chy03g01084 160 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Chy03g01084 160 SMART eIF_5a_2 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Chy03g01084 160 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Chy03g01084 160 MobiDBLite consensus disorder prediction 1 21 - -
Chy03g01084 160 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Chy03g01084 160 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy10g01040 Chy-Chr10:15654670 Chy03g01084 Chy-Chr3:14216586 8.28E-105 transposed
Chy03g01084 Chy-Chr3:14216586 Chy07g00329 Chy-Chr7:2671510 1.02E-78 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01084 K03263 K02180 csv:101211156 324.324