Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy03g01084 | ATGTCGGACGAAGAGCATCATTTTGAGTCCAAGGCCGACGCCGGAGCCTCCAAGACCTTCCCTCAACAGGCCGGAACCATCCGCAAGAATGGCTACATTGTCATCAAGGGCCGTCCCTGCAAGGTAGTTGAGGTTTCAACATCCAAGACTGGAAAGCATGGGCATGCTAAATGTCACTTTGTTGCAATCGATATCTTCACTGGCAAAAAAGTTGAAGATATTGTTCCATCATCCCACAACTGTGATGTTCCTGAGGTAACTCGTACCGATTATCAGCTTATTGACATATCTGAAGATGGATTTGTGAGTCTCTTGACTGACAATGGAAGCACAAAGGATGATTTGAGGCTTCCTACTGATGAAAGTTTACTTGCTCAGATTAAAGATGGATTTGCAGAAGGAAAGGACCTTGTTGTGAGTGTCATGTCAGCCATGGGAGAAGAACAAATTTGTGGCTTGAAGGATATCGGCCCAAAGAACTAA | 483 | 44.93 | MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKVEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLPTDESLLAQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKN* | 161 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 14216586 | 14218833 | - | Chy3G060640.1 | Chy03g01084 | 223245 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy03g01084 | 160 | Pfam | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 86 | 154 | IPR020189 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Chy03g01084 | 160 | Gene3D | - | 1 | 85 | IPR014722 | - | |
Chy03g01084 | 160 | PANTHER | BNAA07G09420D PROTEIN | 1 | 156 | - | - | |
Chy03g01084 | 160 | TIGRFAM | eIF_5A: translation elongation factor IF5A | 18 | 152 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Chy03g01084 | 160 | Gene3D | - | 86 | 159 | IPR012340 | - | |
Chy03g01084 | 160 | CDD | S1_eIF5A | 86 | 156 | - | - | |
Chy03g01084 | 160 | PANTHER | TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER | 1 | 156 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Chy03g01084 | 160 | ProSitePatterns | Eukaryotic initiation factor 5A hypusine signature. | 50 | 57 | IPR019769 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Chy03g01084 | 160 | SMART | eIF_5a_2 | 85 | 154 | IPR020189 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Chy03g01084 | 160 | SUPERFAMILY | Nucleic acid-binding proteins | 86 | 156 | IPR012340 | - | |
Chy03g01084 | 160 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Chy03g01084 | 160 | PIRSF | Transl_init_eIF5A | 1 | 157 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Chy03g01084 | 160 | SUPERFAMILY | Translation proteins SH3-like domain | 15 | 93 | IPR008991 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy10g01040 | Chy-Chr10:15654670 | Chy03g01084 | Chy-Chr3:14216586 | 8.28E-105 | transposed | |
Chy03g01084 | Chy-Chr3:14216586 | Chy07g00329 | Chy-Chr7:2671510 | 1.02E-78 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy03g01084 | K03263 | K02180 | csv:101211156 | 324.324 |