Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01091 ATGTTGTGTAGAATCGTCACTGTGTCCAATAGGAAAAAGATTGGTGCGGTTCCGGTTTACCTGAATGTGTACGATTTAACGCCGATTAATGGGTATGCCTATTGGCTTGGCCTCGGTGTTTACCATTCCGGCGTACAAGTTCATGGAGTTGAGTACGCATTTGGAGCTCATGAGCATGCGAGTACAGGGATATTCGAAGTGGAACCAAAGCATTGTCCAGGATTCACATACAGAAAATCAATTTTAATAGGAAGGACGAATCTAAGTCCTAGAGAGATTCGATCATTCATGGAGAAACTAGCCGAAGAGTATTCTGGAAATACCTATCATCTCATCACCAAGAACTGTAACCATTTTTGTAACGACGTTTGTATCAGATTGACAGGAAAGCCAATCCCTAGATGGGTAAATCGTCTTGCTCGACTGGGGTTTCTATGCAACTGTGTTCTTCCGGTGGGATTGAATGAAATGAAGGTTGGTGAAGTGAGAGCAGACCAGAACAGAGAGAAGAAGAAATTGAGAACACAATCAAGTAGATATCAAAGTGGTTTGAAATCTGGAGCTGCAGCAACTCCGACGCCATTATCTTCTTCAAAAGCTTCAAATTCCATGGTTAGAAAAACAAGTAAACAAACACATTCTGCTCCATCTTCTTCTTCTATTTTGCTCTCTTCTTCAACCTCTACTTTCCTGTTGAAGCTGTAG 705 41.7 MLCRIVTVSNRKKIGAVPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYAFGAHEHASTGIFEVEPKHCPGFTYRKSILIGRTNLSPREIRSFMEKLAEEYSGNTYHLITKNCNHFCNDVCIRLTGKPIPRWVNRLARLGFLCNCVLPVGLNEMKVGEVRADQNREKKKLRTQSSRYQSGLKSGAAATPTPLSSSKASNSMVRKTSKQTHSAPSSSSILLSSSTSTFLLKL* 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14319508 14320635 + Chy3G060710.1 Chy03g01091 223252

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01091 234 SMART DUF862_2a 17 155 IPR008580 GO:0008233
Chy03g01091 234 ProSiteProfiles PPPDE domain profile. 17 154 IPR008580 GO:0008233
Chy03g01091 234 PANTHER OS02G0788133 PROTEIN 6 225 - -
Chy03g01091 234 Pfam PPPDE putative peptidase domain 18 150 IPR008580 GO:0008233
Chy03g01091 234 Gene3D PPPDE domains 14 171 IPR042266 -
Chy03g01091 234 PANTHER DESUMOYLATING ISOPEPTIDASE 6 225 IPR008580 GO:0008233
Chy03g01091 234 MobiDBLite consensus disorder prediction 177 221 - -
Chy03g01091 234 MobiDBLite consensus disorder prediction 167 221 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01091 K22763 DESI2, PPPDE1; deubiquitinase DESI2 [EC:3.4.19.12] - csv:101212462 433.721
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00822 Chy-Chr1:6847975 Chy03g01091 Chy-Chr3:14319508 1.23E-71 dispersed
Chy03g01091 Chy-Chr3:14319508 Chy03g01478 Chy-Chr3:17246088 2.85E-77 dispersed
Chy06g00972 Chy-Chr6:7175672 Chy03g01091 Chy-Chr3:14319508 7.83E-25 transposed
Chy01g01951 Chy-Chr1:24713414 Chy03g01091 Chy-Chr3:14319508 2.08E-86 wgd
Chy03g01091 Chy-Chr3:14319508 Chy07g00346 Chy-Chr7:2829593 2.29E-113 wgd
Chy03g01091 Chy-Chr3:14319508 Chy07g01565 Chy-Chr7:19892469 4.82E-75 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g527 . . Bda01g00759 . . . . . . . Cma01g01477 . Car09g00374 . Sed09g0886 . . Bhi04g00039 Tan02g2754 Cmetu02g2111 . Hepe10g0224 . Lcy13g1819 . . . . . . . . . . . . . . . . Blo18g00013 . . . . Bma01g01268 . Sed05g1728 Cmo01g01533 Cmo09g00429 . . . . . . Bhi09g02978 Tan01g3588 Cmetu07g0071 . Hepe01g1982 Mch11g0518 . . . . . . . . . . Chy03g01091 Cme07g00105
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001862 3 2 2 1 3 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 6 2 1 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01091 Chy_Chr03 FPKM 0.989644 0.981414 0.0 0.147355 2.195323 1.63249 1.866215 0.0 0.0 0.0