Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01093 ATGGCCAGGCCTCAACAGCGTTATCGAGGCGTTCGTCAAAGACATTGGGGTTCATGGGTCTCCGAAATTCGTCACCCTTTATTGAAAACCAGAATTTGGCTTGGTACTTTCGAAACGGCTGAAGATGCTGCTAGAGCTTACGATGAAGCTGCTCGTTTAATGTGCGGTCCAAGAGCAAGAACCAATTTCCCTTTCAACTCAAATGACTCAAATTCCTCTTCTTCTAAACTTCTCTCTGCCAATTTGACTGCTAAACTCCATCGTTGCTGTATGGCGTCTCTTCATTTTCAGAAACCGGCCACCCATCGCTTCAGTTCCGGCGCTGACGTGGCTGGGATTAAGCCGCCGACGGTGGAGGGTAACACCCAAACGGAGATCGGGCATCAGCCGTTCGTGGCCCTGGAAGAAGATCATATTGAACAGATGATTGAGGAATTGATTCATTATGGGTCTGTTGAGCTCTGCTCTGTTGTGCCACCCTCTCAGGCGTTTTGA 495 48.89 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPFNSNDSNSSSSKLLSANLTAKLHRCCMASLHFQKPATHRFSSGADVAGIKPPTVEGNTQTEIGHQPFVALEEDHIEQMIEELIHYGSVELCSVVPPSQAF* 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14334354 14334954 - Chy3G060730.1 Chy03g01093 223254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01093 164 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700|GO:0006355
Chy03g01093 164 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 1 104 - -
Chy03g01093 164 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 126 158 - -
Chy03g01093 164 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 104 - -
Chy03g01093 164 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Chy03g01093 164 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Chy03g01093 164 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Chy03g01093 164 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Chy03g01093 164 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Chy03g01093 164 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Chy03g01093 164 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 126 158 - -
Chy03g01093 164 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01093 Chy-Chr3:14334354 Chy07g01592 Chy-Chr7:20072370 3.32E-47 dispersed
Chy03g01093 Chy-Chr3:14334354 Chy03g01094 Chy-Chr3:14341367 1.97E-62 tandem
Chy01g01952 Chy-Chr1:24725630 Chy03g01093 Chy-Chr3:14334354 3.31E-54 wgd
Chy03g01093 Chy-Chr3:14334354 Chy07g00348 Chy-Chr7:2841084 8.19E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17708 PF00847 AP2 6.10E-12 CL0081 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01093 - - csv:101205730 301.982