Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy03g01093 | ATGGCCAGGCCTCAACAGCGTTATCGAGGCGTTCGTCAAAGACATTGGGGTTCATGGGTCTCCGAAATTCGTCACCCTTTATTGAAAACCAGAATTTGGCTTGGTACTTTCGAAACGGCTGAAGATGCTGCTAGAGCTTACGATGAAGCTGCTCGTTTAATGTGCGGTCCAAGAGCAAGAACCAATTTCCCTTTCAACTCAAATGACTCAAATTCCTCTTCTTCTAAACTTCTCTCTGCCAATTTGACTGCTAAACTCCATCGTTGCTGTATGGCGTCTCTTCATTTTCAGAAACCGGCCACCCATCGCTTCAGTTCCGGCGCTGACGTGGCTGGGATTAAGCCGCCGACGGTGGAGGGTAACACCCAAACGGAGATCGGGCATCAGCCGTTCGTGGCCCTGGAAGAAGATCATATTGAACAGATGATTGAGGAATTGATTCATTATGGGTCTGTTGAGCTCTGCTCTGTTGTGCCACCCTCTCAGGCGTTTTGA | 495 | 48.89 | MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPFNSNDSNSSSSKLLSANLTAKLHRCCMASLHFQKPATHRFSSGADVAGIKPPTVEGNTQTEIGHQPFVALEEDHIEQMIEELIHYGSVELCSVVPPSQAF* | 165 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 14334354 | 14334954 | - | Chy3G060730.1 | Chy03g01093 | 223254 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy03g01093 | 164 | Gene3D | AP2/ERF domain | 6 | 66 | IPR036955 | GO:0003700|GO:0006355 | |
Chy03g01093 | 164 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 | 1 | 104 | - | - | |
Chy03g01093 | 164 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 126 | 158 | - | - | |
Chy03g01093 | 164 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 1 | 104 | - | - | |
Chy03g01093 | 164 | SUPERFAMILY | DNA-binding domain | 7 | 65 | IPR016177 | GO:0003677 | |
Chy03g01093 | 164 | Pfam | AP2 domain | 7 | 56 | IPR001471 | GO:0003700|GO:0006355 | |
Chy03g01093 | 164 | PRINTS | Ethylene responsive element binding protein signature | 30 | 46 | IPR001471 | GO:0003700|GO:0006355 | |
Chy03g01093 | 164 | PRINTS | Ethylene responsive element binding protein signature | 8 | 19 | IPR001471 | GO:0003700|GO:0006355 | |
Chy03g01093 | 164 | ProSiteProfiles | AP2/ERF domain profile. | 7 | 64 | IPR001471 | GO:0003700|GO:0006355 | |
Chy03g01093 | 164 | CDD | AP2 | 6 | 64 | IPR001471 | GO:0003700|GO:0006355 | |
Chy03g01093 | 164 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 | 126 | 158 | - | - | |
Chy03g01093 | 164 | SMART | rav1_2 | 7 | 70 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy03g01093 | Chy-Chr3:14334354 | Chy07g01592 | Chy-Chr7:20072370 | 3.32E-47 | dispersed | |
Chy03g01093 | Chy-Chr3:14334354 | Chy03g01094 | Chy-Chr3:14341367 | 1.97E-62 | tandem | |
Chy01g01952 | Chy-Chr1:24725630 | Chy03g01093 | Chy-Chr3:14334354 | 3.31E-54 | wgd | |
Chy03g01093 | Chy-Chr3:14334354 | Chy07g00348 | Chy-Chr7:2841084 | 8.19E-68 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
17708 | PF00847 | AP2 | 6.10E-12 | CL0081 | Chy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy03g01093 | - | - | csv:101205730 | 301.982 |