Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01094 ATGCCTAGACCACAACAGAGATTCCGTGGTGTCCGACAACGCCATTGGGGCTCTTGGGTCTCCGAAATCCGCCACCCCTTATTGAAAACTAGAATTTGGCTAGGCACTTTCGAAACAGCGGAAGATGCTGCACGAGCATACGATGAAGCTGCACGTCTTATGTGTGGACCGAGAGCGCGTACGAACTTCCCTTACGATGCTTCTTTGTCTCGCTCCTCGTCTTCCCGCCTTCTCTCTGCTACTTTAACAGCTAAGCTCCATCGTTGCTACATGGCGTCTATGCAGCTCACCAAGCAATCTTCCTCTGCCGCTCGTCGTCCTCAAACCGATGTAATCCGAACCGATTTTTCTGTAGCGTCCGGCATTGCTCCGGTGGAGCGAGTGGAAGTGGACACGACGACGGCAAAGAAAGTCAAAATGGAAAGCGTGGATTGTGGGGAGCCATTGATGATTGAAATGTTGGACGATGATCATATACAACAAATGATCGAGGAGCTACTTGATTACGGTGGAATTGAGCTTCGTTAA 528 50.19 MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYDASLSRSSSSRLLSATLTAKLHRCYMASMQLTKQSSSAARRPQTDVIRTDFSVASGIAPVERVEVDTTTAKKVKMESVDCGEPLMIEMLDDDHIQQMIEELLDYGGIELR* 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14341367 14341996 - Chy3G060740.1 Chy03g01094 223255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01094 175 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Chy03g01094 175 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Chy03g01094 175 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Chy03g01094 175 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Chy03g01094 175 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Chy03g01094 175 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700|GO:0006355
Chy03g01094 175 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Chy03g01094 175 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 1 174 - -
Chy03g01094 175 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Chy03g01094 175 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 174 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01952 Chy-Chr1:24725630 Chy03g01094 Chy-Chr3:14341367 1.67E-56 dispersed
Chy03g01094 Chy-Chr3:14341367 Chy07g00348 Chy-Chr7:2841084 2.53E-70 dispersed
Chy03g01093 Chy-Chr3:14334354 Chy03g01094 Chy-Chr3:14341367 1.97E-62 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17709 PF00847 AP2 1.90E-11 CL0081 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01094 - - csv:101212705 318.931