Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01099 ATGGCTTTTCGCAACCACCTTTCTCGGGACCTTCCTCTCCATTACGCGAATCAGTCTCAACAGCAGCAATCGGAACGCCCACTTTCTGATAACACTCTGCGCTCGATTCTATCCGATCAACTTACGGATCACTCTACAGCTGCCGATGGTTCTAAGTCTGAGAATCCGCTTCAGAGCGCTCCGAATTGGCTGAATACTGCTTTACTTCGGAATCAAACCCCTCATTCTCACTACTCCGGTGAGTCCACGACGACCGCTGCGGATAACGTCAACACCGACTTCCTTAATCTTCACACGACTGCTCCCAATTCGTCCGGTCAATGGCTTTCCCGCCCGATCCTCCATCGCAATCAAAGTGATGTTATCGATGACGTCGCCGATGCTGCCGATGCTATGATTGGCGCTACTGCGACTTTGTCGCGTGAATCGGATGATTTGAAGAACAACAGCAGTGGTGGGGGAGGGGAGGGTGTGAATAACAGCGACGATGTGGCGGTTGAGAGCGATTGTAATGAAGGTGCTCGTGGTGGAGAAGCGGCGATGAATTGGCAGAATGCGCAGTTTAAGGCTGAAATTCTGGCGCATCCTCTTTATGAGCAGCTGCTCTCTGCTCATGTCGCCTGCCTCCGGATCGCAACGCCGGTGGATCAGTTGCCGAGAATAGATTCTCAGCTTTCTCGGTCTCAGAATGTGGCGGCGAAATACTCGTCGCTGGGCAACGGTTCCCAGTCCATAGTCAGCAATGGAAAAGAGCTTGATCAGTTCATGACGCATTATGTTTTTTTACTTTGTTCTTTTAAAGAACAACTCCAGCAACATGTCCGTGTCCATGCAATGGAAGCAGTATATGCCTGCTGGGAAATTGAGCAATCTCTGCAAAGCTTGACAGGCGTTTCACCAGGTGTAGGTACGGGTGCTACAATGTCCGATGATGACGAAGACCAAATAGATAGCGATGCTAATTTGTTTGATGGAAGTTTGGAGGGTCATGATACTATGGGATTCGGTCCCCTTATCCCAACAGAGAGTGAGAGATCCTTGATGGAAAGGGTCAGGCACGAATTGAAGCATGAACTAAAGAATGGATACAAGGAGAAAATTGTAGATATAAGGGAGGAGATCTTACGAAAAAGGAGAGCAGGTAAACTTCCTGGTGACACCACGTCCGTCTTAAAAGCTTGGTGGCAATCACATTCAAAATGGCCATATCCAACTGAGGAAGATAAAACAAAGTTGGTTCAGGAAACTGGTCTTCAATTAAAGCAGATAAATAACTGGTTTATTAACCAAAGGAAGAGGAATTGGCACACAAATCCTTCAACCTCAACAACCTTGAAGACTAAACGCAAAAGATTTGAAGCATTGAATGAAACTGGGAATCATCGAGTGTTTTGGGGTTCAGCAGCAATGTTGATGTTGAAGTGCGTTGTAATTTAA 1437 47.04 MAFRNHLSRDLPLHYANQSQQQQSERPLSDNTLRSILSDQLTDHSTAADGSKSENPLQSAPNWLNTALLRNQTPHSHYSGESTTTAADNVNTDFLNLHTTAPNSSGQWLSRPILHRNQSDVIDDVADAADAMIGATATLSRESDDLKNNSSGGGGEGVNNSDDVAVESDCNEGARGGEAAMNWQNAQFKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDSQLSRSQNVAAKYSSLGNGSQSIVSNGKELDQFMTHYVFLLCSFKEQLQQHVRVHAMEAVYACWEIEQSLQSLTGVSPGVGTGATMSDDDEDQIDSDANLFDGSLEGHDTMGFGPLIPTESERSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKTKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTTLKTKRKRFEALNETGNHRVFWGSAAMLMLKCVVI* 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14381849 14387571 + Chy3G060790.1 Chy03g01099 223260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01099 478 Pfam KNOX1 domain 188 228 IPR005540 GO:0003677|GO:0005634
Chy03g01099 478 CDD homeodomain 377 438 IPR001356 GO:0003677
Chy03g01099 478 MobiDBLite consensus disorder prediction 142 157 - -
Chy03g01099 478 SMART KNOX2_2 241 297 IPR005541 GO:0003677|GO:0005634
Chy03g01099 478 SUPERFAMILY Homeodomain-like 376 440 IPR009057 -
Chy03g01099 478 Pfam ELK domain 354 375 IPR005539 GO:0003677
Chy03g01099 478 Pfam Homeobox KN domain 394 433 IPR008422 GO:0003677|GO:0006355
Chy03g01099 478 ProSiteProfiles ELK domain profile. 354 374 IPR005539 GO:0003677
Chy03g01099 478 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 48 453 - -
Chy03g01099 478 ProSiteProfiles 'Homeobox' domain profile. 374 437 IPR001356 GO:0003677
Chy03g01099 478 Gene3D - 373 447 - -
Chy03g01099 478 SMART KNOX1_2 186 230 IPR005540 GO:0003677|GO:0005634
Chy03g01099 478 SMART ELK_2 354 375 IPR005539 GO:0003677
Chy03g01099 478 MobiDBLite consensus disorder prediction 12 29 - -
Chy03g01099 478 MobiDBLite consensus disorder prediction 142 168 - -
Chy03g01099 478 Pfam KNOX2 domain 247 296 IPR005541 GO:0003677|GO:0005634
Chy03g01099 478 SMART HOX_1 376 441 IPR001356 GO:0003677
Chy03g01099 478 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 48 453 - -
Chy03g01099 478 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01099 Chy-Chr3:14381849 Chy09g01175 Chy-Chr9:13952596 7.44E-135 dispersed
Chy03g01099 Chy-Chr3:14381849 Chy07g00355 Chy-Chr7:2902533 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17710 PF03791 KNOX2 1.40E-18 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01099 - - csv:101213817 857.055