Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01111 ATGTTTGCTGCAGAAAATGGTCTTAAGGGAGACCCCAGGCTTCAAGGCATCTCTCAAGCCATTAGAGTTGTTCCGCACTTCCCTAAGCCCGGGATAATGTTTCAAGATATTACTACGTTGTTGCTTGATCACAAGGCGTTTAAGGATACTGTCGACATTTTTGTAGATCGTTACAGGGGAATGAACATCTCTGTTGTTGCTGGTGTAGAAGCCAGAGGATTCATGTTTGGTCCTTCAATTGCTTTATCCATTGGAGCAAAGTTCGTTCCTTTACGCAAACCCGGAAAGCTTCCTGGTGAAGTAATTTCAGAAGCCTATGATTTGGAGTATGGAACTGATTGCTTAGAAATGCAAATAGATGCTGTGAAAACTGGTGAACGTGCATTGGTTATTGATGATTTGGTGGCCACTGGTGGAACCTTATCGGCAGCAATCAGGCTTCTGGAACGGATGGGTGCTGAAGTGGTTGAATGTGCTTGTGTTGTCGGATTGCGCGAAGTTAAGGCTGATAGTGAGAAGATGATGCTTGAGCAAACAGGTTCCCCCATTTGCATTATGGAGCCTACATTACGGAAGGAAAGAAAGCAAGCAAGCCACTGCAATGGTTTTATTGATGTAACAATGTCAGAGAGTAGCATTATCATCCATTCCTCTGTGGGACTTCCTCAGATATCTAAAGGTTATGGGCACCCTGGCTGA 699 44.35 MFAAENGLKGDPRLQGISQAIRVVPHFPKPGIMFQDITTLLLDHKAFKDTVDIFVDRYRGMNISVVAGVEARGFMFGPSIALSIGAKFVPLRKPGKLPGEVISEAYDLEYGTDCLEMQIDAVKTGERALVIDDLVATGGTLSAAIRLLERMGAEVVECACVVGLREVKADSEKMMLEQTGSPICIMEPTLRKERKQASHCNGFIDVTMSESSIIIHSSVGLPQISKGYGHPG* 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14450902 14455673 - Chy3G060910.1 Chy03g01111 223272

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01111 232 Gene3D - 5 184 IPR029057 -
Chy03g01111 232 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 1 170 - -
Chy03g01111 232 TIGRFAM apt: adenine phosphoribosyltransferase 18 172 IPR005764 GO:0003999|GO:0005737|GO:0006168
Chy03g01111 232 CDD PRTases_typeI 51 173 IPR000836 -
Chy03g01111 232 Pfam Phosphoribosyl transferase domain 58 165 IPR000836 -
Chy03g01111 232 SUPERFAMILY PRTase-like 19 164 IPR029057 -
Chy03g01111 232 PANTHER BNACNNG33750D PROTEIN 1 170 - -
Chy03g01111 232 Hamap Adenine phosphoribosyltransferase [apt]. 17 193 IPR005764 GO:0003999|GO:0005737|GO:0006168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01111 K00759 APRT, apt; adenine phosphoribosyltransferase [EC:2.4.2.7] - csv:101215432 329.331
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01111 Chy-Chr3:14450902 Chy03g01586 Chy-Chr3:17886508 5.11E-85 dispersed
Chy03g01111 Chy-Chr3:14450902 Chy06g02026 Chy-Chr6:24202609 1.20E-85 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g497 . . . . Bpe02g01252 . . . Cmo05g00378 Cmo12g00294 . Cma05g00376 . Car12g00327 Sed01g1380 . . Bhi04g00941 Tan02g2731 Cmetu03g1736 . Hepe10g0243 . Lcy13g1798 . . . . . . . . . Cone17ag1015 Cone20ag0355 . . . Cme03g01606 . Blo18g00019 Bda01g01004 Bda13g01256 Bpe14g00584 . Bma01g01273 . . . . . Cma12g00344 . Car05g00320 . . . . . . . . . Cla08g01342 Cam08g1804 Cec08g1383 Cco08g1511 Clacu08g1498 . Cre08g1285 Lsi08g01213 . Chy03g01111 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy09g01111 . 30 180 PRT Gene Family AT1G80050 75.5 4.6e-62 234.2
Chy03g01111 . 33 189 PRT Gene Family AT1G80050 72.2 9.0e-58 219.9
Chy06g02026 . 32 167 PRT Gene Family AT1G80050 77.2 4.5e-57 217.6
Chy03g01586 . 119 268 PRT Gene Family AT1G80050 70.7 6.5e-56 213.8
Chy03g01111 . 1 148 PRT Gene Family AT5G11160 80.4 8.8e-64 240.0
Chy09g01111 . 8 145 PRT Gene Family AT5G11160 76.1 1.5e-55 212.6
Chy03g01586 . 95 234 PRT Gene Family AT5G11160 72.9 9.7e-55 209.9
Chy06g02026 . 10 147 PRT Gene Family AT5G11160 72.5 2.4e-53 205.3
Chy03g01586 . 90 270 PRT Gene Family AT1G27450 82.3 1.1e-80 296.2
Chy09g01111 . 7 180 PRT Gene Family AT1G27450 73.6 1.3e-71 266.2
Chy06g02026 . 6 167 PRT Gene Family AT1G27450 77.8 9.9e-69 256.5
Chy03g01111 . 11 168 PRT Gene Family AT1G27450 72.2 1.8e-62 235.7
Chy11g00327 . 74 558 PRT Gene Family AT2G16570 85.0 1.0e-241 832.8
Chy11g00327 . 73 558 PRT Gene Family AT4G34740 85.4 1.6e-242 835.5
Chy11g00327 . 48 531 PRT Gene Family AT4G38880 72.1 5.0e-198 687.6
Chy03g01586 . 90 270 PRT Gene Family AT1G27450 82.3 1.1e-80 296.2
Chy09g01111 . 7 180 PRT Gene Family AT1G27450 73.6 1.3e-71 266.2
Chy06g02026 . 6 167 PRT Gene Family AT1G27450 77.8 9.9e-69 256.5
Chy03g01111 . 11 168 PRT Gene Family AT1G27450 72.2 1.8e-62 235.7
Chy09g01111 . 30 180 PRT Gene Family AT1G80050 75.5 4.6e-62 234.2
Chy03g01111 . 33 189 PRT Gene Family AT1G80050 72.2 9.0e-58 219.9
Chy06g02026 . 32 167 PRT Gene Family AT1G80050 77.2 4.5e-57 217.6
Chy03g01586 . 119 268 PRT Gene Family AT1G80050 70.7 6.5e-56 213.8
Chy06g02026 . 6 99 PRT Gene Family AT4G22570 87.2 3.7e-44 174.1
Chy09g01111 . 6 104 PRT Gene Family AT4G22570 81.8 6.4e-44 173.3
Chy03g01586 . 94 186 PRT Gene Family AT4G22570 80.6 1.6e-39 158.7
Chy06g02026 . 7 98 PRT Gene Family AT4G12440 87.0 4.6e-41 163.7
Chy09g01111 . 1 96 PRT Gene Family AT4G12440 83.3 1.3e-40 162.2
Chy03g01586 . 90 185 PRT Gene Family AT4G12440 79.2 6.2e-38 153.3
Chy03g01111 . 1 148 PRT Gene Family AT5G11160 80.4 8.8e-64 240.0
Chy09g01111 . 8 145 PRT Gene Family AT5G11160 76.1 1.5e-55 212.6
Chy03g01586 . 95 234 PRT Gene Family AT5G11160 72.9 9.7e-55 209.9
Chy06g02026 . 10 147 PRT Gene Family AT5G11160 72.5 2.4e-53 205.3
Chy03g00477 . 1 188 PRT Gene Family AT1G71750 64.8 4.4e-70 261.2
Chy06g01388 . 19 482 PRT Gene Family AT1G55810 73.3 3.0e-199 691.4
Chy06g01388 . 80 482 PRT Gene Family AT3G27440 75.4 8.3e-180 626.7
Chy06g01388 . 1 483 PRT Gene Family AT3G27190 86.4 1.8e-247 851.7
Chy08g00711 . 3 289 PRT Gene Family AT3G53900 66.6 3.9e-107 384.8
Chy06g01388 . 11 482 PRT Gene Family AT4G26510 75.4 8.6e-210 726.5
Chy06g01388 . 1 482 PRT Gene Family AT5G40870 86.3 7.0e-247 849.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000311 4 6 3 5 5 4 7 4 4 4 4 4 7 4 4 7 4 6 1 4 4 4 4 5 4 4 4 10 6 3 139
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01111 Chy_Chr03 FPKM 2.583569 2.265325 2.554085 3.823037 2.134367 1.310239 2.057021 10.39023 10.466182 10.587207